Komatsuzaki Group

James N. Taylor

jnick 特任助教
  1. Molecule & Life Nonlinear Sciences Laboratory, Research Center of Mathematics for Social Creativity, Research Institute for Electronic Science
  2. Graduate School of Life Science, Transdisciplinary Life Science Course
E-mail:
jntaylor(at)es.hokudai.ac.jp
TEL:
(011)706-9459
FAX:
(011)706-9437
居室:
Research Institute for Electronic Science, 5th floor, room 203
住所:
Research Institute for Electronic Science, Hokkaido University, Kita 20 Nishi 10, Kita-ku, Sapporo 001-0020, Japan

論文

2019

[5]Khalifa Mohammad Helal, James Nicholas Taylor, Harsono Cahyadi, Akira Okajima, Koji Tabata, Yoshito Itoh, Hideo Tanaka, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Raman spectroscopic histology using machine learning for nonalcoholic fatty liver disease
FEBS Letters , (2019)
DOI: 10.1002/1873-3468.13520

[4]J. Nicholas Taylor, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
High-Resolution Raman Microscopic Detection of Follicular Thyroid Cancer Cells with Unsupervised Machine Learning
The Journal of Physical Chemistry B 123(20), pp.4358-4372 (2019)
DOI: 10.1021/acs.jpcb.9b01159

2018

[3]James Nicholas Taylor, Menahem Pirchi, Gilad Haran, Tamiki Komatsuzaki
Deciphering hierarchical features in the energy landscape of adenylate kinase folding/unfolding
The Journal of Chemical Physics 148, pp.123325-1-123325-14 (2018)
DOI: 10.1063/1.5016487

2015

[2]J. N. Taylor, C.-B. Li, D. Cooper, C. F. Landes, T. Komatsuzaki
Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series
Scientific Reports 5, pp.9174-1-9174-9 (2015)
DOI: 10.1038/srep09174

2014

[1]B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, J. Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis
The Journal of Physical Chemistry Letters 5, pp.3157-3161 (2014)
DOI: 10.1021/jz501435p

国内発表

2019

[19]James Nicholas Taylor, Menahem Pirchi, Gilad Haran, 小松崎 民樹
アデニレートキナーゼの一分子観察データから再構成するエネルギー地形の階層性 第22回理論化学討論会
(5.27-5.29 ,2019), 北海道大学 学術交流会館 北海道札幌市 (口頭) ( 発表日: 2019.5. 29)

[18]Helal Khalifa Mohammad, Cahyadi Harsono, Taylor J. Nicholas, Okajima Akira, Kumamoto Yasuaki, Tanaka Hideo, Harada Yoshinori, Komatsuzaki Tamiki
Analysis of Raman Microscopic Images of Liver Tissu to Predict Non-alcholic Fatty Liver Disease 生物物理・回折構造生物学 合同研究会
(3.14 ,2019), 北海道大学 北海道札幌市 (口頭) ( 発表日: 2019.3. 14)

[17]J. Nicholas Taylor
High resolution Raman microscopic detection of follicular thyroid cancer cells with unsupervised machine learning バイオ情報計測技術研究会
(3.2-3.3 ,2019), グリーンピア大沼 北海道茅部郡森町 (口頭) ( 発表日: 2019.3. 3)

2018

[16]J. Nicholas Taylor, Kentaro Mochizuki, Katsumasa Fujita, Tamiki Komatsuzaki
Classification of Raman Spectra of Healthy and Cancerous Human Follicular Thyroid Cells 研究会「理論と実験」2018
(10.4-10.5 ,2018), 広島大学理学部 広島県東広島市 (口頭) ( 発表日: 2018.10. 4)

[15]Helal Khalifa Mohammad, Cahyadi Harsono, Taylor J. Nicholas, Okajima Akira, Kumamoto Yasuaki, Tanaka Hideo, Harada Yoshinori, Komatsuzaki Tamiki
Machine Learning Approaches to Raman Micro-spectroscopic Images 第56回日本生物物理学会年会
(9.15-9.17 ,2018), 岡山大学 津島キャンパス 岡山県岡山市 (ポスター) ( 発表日: 2018.9. 17)

[14]J. Nicholas Taylor
Quantification of Raman Microscopic Images of Human Thyroid Cells with Machine Learning 理研シンポジウム「細胞システムの動態と論理X」
(4.12-4.13 ,2018), 理化学研究所 生物科学研究棟 埼玉県和光市 (口頭) ( 発表日: 2018.4. 13)

[13]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Mulitivariate Data-driven approach to Raman Hyper-spectral Images to Diagnose Non-alcoholic Fatty Liver Disease(NAFLD) 2017年度日本生物物理学会北海道支部例会
(3.20 ,2018), 北海道大学理学部5号館 北海道札幌市 (口頭) ( 発表日: 2018.3. 20)

2017

[12]山田 寛子, 田畑 公次, Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, 伊藤 創祐, 熊本 康昭, 田中 秀央, 原田 義規, 小松﨑 民樹
ラマンスペクトルで細胞の病態を分ける-PCAとランダムフォレストを用いて- 研究会「理論と実験」2017
(10.6-10.7 ,2017), 広島大学東広島キャンパス 広島県東広島市 (ポスター) ( 発表日: 2017.10. 6)

[11]Helal Khalifa mohammad, Cahyadi Harsono, Taylor J. nicholas, Okajima Akira, Kumamoto Yasuaki, Tanaka Hideo, Harada Yoshinori, Komatsuzaki Tamiki
Information-theoretical data analysis approaches to Raman micro-spectroscopic images 第11回分子科学討論会
(9.15-9.18 ,2017), 東北大学 川内北キャンパス 宮城県仙台市 (口頭) ( 発表日: 2017.9. 15)

[10]J.N. Taylor, C.-B. Li, K. Fujita, T. Komatsuzaki
Data-Driven Analysis of Raman Microscopic Images 電子科学研究所 研究交流会
(1.6 ,2017), 北海道大学電子科学研究所 北海道札幌市 (ポスター) ( 発表日: 2017.1. 6)

2016

[9]J. N. Taylor, K. Fujita, T. Komatsuzaki
Data Driven Approaches to Raman Microscopic Analysis 第54回日本生物物理学会年会
(11.25-11.27 ,2016), つくば国際会議場 茨城県つくば市 (ポスター) ( 発表日: 2016.11. 25)

[8]J. Nicholas Taylor, K. Fujita, T. Komatsuzaki
Data-Driven Approaches to Raman Microscopic Image Analysis 「理論と実験」研究会2016
(10.7-10.8 ,2016), 広島大学東広島キャンパス 広島県東広島市 (口頭) ( 発表日: 2016.10. 7)

[7]J. Nicholas Taylor
Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series Mathematical Sciences Evening Seminar
(4.8 ,2016), 北海道大学遠友学舎 北海道札幌市 (口頭) ( 発表日: 2016.4. 8)

2015

[6]冨樫 祐一, 小松崎 民樹, 李 振風, 寺本 央, 新海 創也, Holger Flechsig, James Nick Taylor, 中川 正基
少数分子反応ネットワーク理論の構築 (7) 新学術領域「少数性生物学」第9回領域会議
(6.5-6.7 ,2015), 万国津梁館 沖縄県名護市 (口頭) ( 発表日: 2015.6. 6)

[5]J. Nick Taylor, Chun Biu Li, Tamiki Komatsuzaki
Data Scientific Approaches to the Quantification and Interpretation of Raman Microscopic Images of Living Cells 新学術領域研究「少数性生物学」第8回領域会議
(1.29-2.1 ,2015), ルスツリゾート 虻田郡留寿都村 (ポスター) ( 発表日: 2015.1. 29)

2014

[4]J. Nick Taylor, Chun Biu Li, Tamiki Komatsuzaki
Extracting the Underlying Free Energy Landscape Buried in Photon-by- Photon based Single-Molecule Measurements 新学術領域研究「少数性生物学」第6回領域会議
(2. 20-2. 23 ,2014), ヒルトンニセコビレッジ 北海道ニセコ (ポスター) ( 発表日: 2014.2. 21)

2013

[3]J. Nick Taylor, Li Chun-Biu, Kawai Shinnosuke, Komatsuzaki Tamiki
An Information-Theoretical approach to Local Equilibrium State Analysis for Single-Molecule Time-Series 第51回日本生物物理学会年会
(10.28-10.30 ,2013), 国立京都国際会館 京都府京都市 (ポスター) ( 発表日: 2013.10. 30)

[2]Nick Taylor
An Information-Theoretical approach to Local Equilibrium State Analysis for Single-Molecule Time-Series A Symposium on Single Molecule Biophysics and Cyt c Biochemistry
(8.23-8.25 ,2013), 定山渓ビューホテル 北海道札幌市 (口頭) ( 発表日: 2013.8. 23)

[1]小松崎 民樹, Chun Biu Li, 寺本央, 河合信之輔, James N. Taylor
階層性と多様性を内包する生命動態システムの解析基盤創成 平成24年度アライアンス成果報告会
(4.23 ,2013), 北大学術交流会館 (ポスター) ( 発表日: 2013.4. 23)

国際発表

2019

[19]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Microscopic Histology using Ensemble Learning for Non-alcoholic Fatty Liver Disease
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)

[18]J. Nicholas Taylor, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
High Resolution Raman Microscopic Detection of Follicular Thyroid Cancer Cells with Unsupervised Machine Learning
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)

[17]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Hyperspectral Image Analysis Using Ensemble Learning for Non-alcoholic Fatty Liver Disease
Biomedical Raman Imaging 2019(11.24-11.26 ,2019), Icho Kaikan, Suita Campus, Osaka University, Osaka, Japan 11, 25 (oral)

2018

[16]J. Nicholas Taylor, Kentaro Mochizuki, Katsumasa Fujita, Tamiki Komatsuzaki
Data-Driven Analysis of Raman Microscopic Images of Human Follicular Thyroid Cells
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12, 11 (Poster)

[15]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Information-theoretical Approaches to Raman Microscopic Images to Predict Non-alcoholic Fatty Liver Disease
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12, 11 (Poster)

2017

[14]J. Nicholas Taylor, Tamiki Komatsuzaki
Apparent Nonequilibrium Behavior in Single-Molecule FRET Time-Series Induced by Photophysics
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11, 30 (Poster)

[13]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yauaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Microscopic Image Analysis based on Information-theoretic Approach
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11, 30 (Poster)

2016

[12]J.N. Taylor, Chun-Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-Driven Approaches to Raman Microscopic Image Analysis
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12, 13 (Poster)

[11]J. Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images
The Biophysical Society 2016 BPS Annual Meeting(2.27-3.2 ,2016), Los Angeles Convention Center, Los Angeles, USA 2, 27 (oral)

2015

[10]Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images
Symposium #121 Deciphering molecular complexity from protein functions to cellular network (The 2015 International Chemical Congress of Pacific Basin Societies)(12.15-12.16 ,2015), Convention Center, Hawaii, USA 12, 16 (oral)

[9]Nick Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series
The Complexity of Dynamics Kinetics from Single Molecules to Cells(6.14-6.18 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6, 18 (Oral)

[8]B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis
2015 Oil & Gas High Performance Computing Workshop(3.4-3.5 ,2015), BioScience Research Collaborative (BRC) Building, Rice University, Houston, USA 3, 5 (poster)

[7]Bo Shuang, David Cooper, J. Nick Taylor, Lydia Kisley, Jixin Chen, Wenxiao Wang, Chun Biu Li, Tamiki Komatsuzaki, Chrisy Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis
The 2015 Quantitative BioImaging Conference(1.7-1.9 ,2015), Institut Pasteur, Paris, France (poster)

2014

[6]J.N. Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
The 15th Ries-Hokudai International Symposium 響[hibiki](12.16-12.17 ,2014), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12, 16 (poster)

[5]Nick Taylor
Extracting Free Energy Landscapes from Noisy Single-Molecule
Workshop "What kinds of dynamical feature can we extract from data?"(8.27-8.28 ,2014), Niseko town center, Niseko, Hokkaido 8, 27 (oral)

[4]Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
Macromolecular dynamics: structure, function and diseases(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 7, 3 (oral)

[3]Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
ICBP 8th IUPAP international conference on biological physics(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 6, 21 (oral)

2013

[2]J. N. Taylor, Chun Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
An Information-Theoretical Approach to Local Equilibrium State Analysis for Single-Molecule Time-Series
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[1]James N. Taylor, Shinnosuke Kawai, Chun Biu Li, Tamiki Komatsuzaki
Let Systems Tell for themselves: Energy Landscape and Complex Network
G3meeting,Academia Sinica(10.21-10.23 ,2013), Taipei, Taiwan