Komatsuzaki Group

James N. Taylor

jnick Specially Appointed Assistant Professor
  1. Molecule & Life Nonlinear Sciences Laboratory, Research Center of Mathematics for Social Creativity, Research Institute for Electronic Science
  2. Graduate School of Life Science, Transdisciplinary Life Science Course
E-mail:
jntaylor(at)es.hokudai.ac.jp
TEL:
(011)706-9459
FAX:
(011)706-9437
office:
Research Institute for Electronic Science, 5th floor, room 203
Mailing address:
Research Institute for Electronic Science, Hokkaido University, Kita 20 Nishi 10, Kita-ku, Sapporo 001-0020, Japan

Papers

2014

[5]B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, J. Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis
The Journal of Physical Chemistry Letters 5, pp.3157-3161 (2014)
DOI: 10.1021/jz501435p

2015

[4]J. N. Taylor, C.-B. Li, D. Cooper, C. F. Landes, T. Komatsuzaki
Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series
Scientific Reports 5, pp.9174-1-9174-9 (2015)
DOI: 10.1038/srep09174

2018

[3]James Nicholas Taylor, Menahem Pirchi, Gilad Haran, Tamiki Komatsuzaki
Deciphering hierarchical features in the energy landscape of adenylate kinase folding/unfolding
The Journal of Chemical Physics 148, pp.123325-1-123325-14 (2018)
DOI: 10.1063/1.5016487

2019

[2]Khalifa Mohammad Helal, James Nicholas Taylor, Harsono Cahyadi, Akira Okajima, Koji Tabata, Yoshito Itoh, Hideo Tanaka, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Raman spectroscopic histology using machine learning for nonalcoholic fatty liver disease
FEBS Letters , (2019)
DOI: 10.1002/1873-3468.13520

[1]J. Nicholas Taylor, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
High-Resolution Raman Microscopic Detection of Follicular Thyroid Cancer Cells with Unsupervised Machine Learning
The Journal of Physical Chemistry B 123(20), pp.4358-4372 (2019)
DOI: 10.1021/acs.jpcb.9b01159

Presentation

2013

[19]J. N. Taylor, Chun Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
An Information-Theoretical Approach to Local Equilibrium State Analysis for Single-Molecule Time-Series
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[18]James N. Taylor, Shinnosuke Kawai, Chun Biu Li, Tamiki Komatsuzaki
Let Systems Tell for themselves: Energy Landscape and Complex Network
G3meeting,Academia Sinica(10.21-10.23 ,2013), Taipei, Taiwan

2014

[17]J.N. Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
The 15th Ries-Hokudai International Symposium 響[hibiki](12.16-12.17 ,2014), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12, 16 (poster)

[16]Nick Taylor
Extracting Free Energy Landscapes from Noisy Single-Molecule
Workshop "What kinds of dynamical feature can we extract from data?"(8.27-8.28 ,2014), Niseko town center, Niseko, Hokkaido 8, 27 (oral)

[15]Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
Macromolecular dynamics: structure, function and diseases(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 7, 3 (oral)

[14]Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
ICBP 8th IUPAP international conference on biological physics(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 6, 21 (oral)

2015

[13]Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images
Symposium #121 Deciphering molecular complexity from protein functions to cellular network (The 2015 International Chemical Congress of Pacific Basin Societies)(12.15-12.16 ,2015), Convention Center, Hawaii, USA 12, 16 (oral)

[12]Nick Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series
The Complexity of Dynamics Kinetics from Single Molecules to Cells(6.14-6.18 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6, 18 (Oral)

[11]B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis
2015 Oil & Gas High Performance Computing Workshop(3.4-3.5 ,2015), BioScience Research Collaborative (BRC) Building, Rice University, Houston, USA 3, 5 (poster)

[10]Bo Shuang, David Cooper, J. Nick Taylor, Lydia Kisley, Jixin Chen, Wenxiao Wang, Chun Biu Li, Tamiki Komatsuzaki, Chrisy Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis
The 2015 Quantitative BioImaging Conference(1.7-1.9 ,2015), Institut Pasteur, Paris, France (poster)

2016

[9]J.N. Taylor, Chun-Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-Driven Approaches to Raman Microscopic Image Analysis
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12, 13 (Poster)

[8]J. Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images
The Biophysical Society 2016 BPS Annual Meeting(2.27-3.2 ,2016), Los Angeles Convention Center, Los Angeles, USA 2, 27 (oral)

2017

[7]J. Nicholas Taylor, Tamiki Komatsuzaki
Apparent Nonequilibrium Behavior in Single-Molecule FRET Time-Series Induced by Photophysics
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11, 30 (Poster)

[6]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yauaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Microscopic Image Analysis based on Information-theoretic Approach
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11, 30 (Poster)

2018

[5]J. Nicholas Taylor, Kentaro Mochizuki, Katsumasa Fujita, Tamiki Komatsuzaki
Data-Driven Analysis of Raman Microscopic Images of Human Follicular Thyroid Cells
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12, 11 (Poster)

[4]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Information-theoretical Approaches to Raman Microscopic Images to Predict Non-alcoholic Fatty Liver Disease
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12, 11 (Poster)

2019

[3]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Microscopic Histology using Ensemble Learning for Non-alcoholic Fatty Liver Disease
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)

[2]J. Nicholas Taylor, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
High Resolution Raman Microscopic Detection of Follicular Thyroid Cancer Cells with Unsupervised Machine Learning
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)

[1]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Hyperspectral Image Analysis Using Ensemble Learning for Non-alcoholic Fatty Liver Disease
Biomedical Raman Imaging 2019(11.24-11.26 ,2019), Icho Kaikan, Suita Campus, Osaka University, Osaka, Japan 11, 25 (oral)