Komatsuzaki Group

Presentations

2016 |2015 |2014 |2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000

2000

[266]Tamiki Komatsuzaki
Dynamical Hierarchy in Transition States: Why and How Systems Climb over the Transition State
Workshop on Dynamical Problems on Condensed Chemical Systems of Clusters and Proteins(1.18-1.19 ,2000), Kobe Japan (organizer’s contributed talk)
(organizer’s contributed talk)

[265]Tamiki Komatsuzaki, R. Stephen Berry
Regularity in Chaotic Reaction Path -Universal, Multi-Dimensional Phase-Space Dividing Surface Free From Recrossing Problem
Gordon Conference Chemical Physics Summer School(6.18-6.30 ,2000), Roger Williams University, RI, USA (poster)

[264]
International Conference on Dynamical Aspects of Complex Systems From Cells to Brain(11.29-12.1 ,2000), Sendai (participant)

2001

[263]Tamiki Komatsuzaki
Non-recrossing Reaction Path in Many-Body Phase Space: Hidden Deterministics of Why Reacting Systems Climb through Transition States
A Symposium on Frontiers of Theoretical Chemistry(3.12-3.14 ,2001), Tokyo Japan (invited)

[262]Tamiki Komatsuzaki
Hierarchical Regularities Buried in a Sea of Chaos: Chemical Reactions and Protein Foldings
Telluride Summer Workshop (7.15-7.29 ,2001), Telluride, Colorado USA (invited)

[261]Yasuhiro Matsunaga, Tamiki Komatsuzaki
Hierarchical Regularity in Protein Folding Dynamics
The 4th International Conference on Biological Physics(7.30-8.3 ,2001), Kyoto Japan (poster)

[260]Yasuhiro Matsunaga, Tamiki Komatsuzaki
Protein Folding Dynamics --Anomalous Diffusion and Hierarchical Regularity
International Conference on Molecular Physical Chemistry(12.17-12.19 ,2001), Okazaki Japan, 17-19 (poster)

[259]Tamiki Komatsuzaki
Why and How does the System Climb Through the Saddles?-- No-return Dividing Surface in Phase Spaces
nternational Conference on Molecular Physical Chemistry(12.17-12.19 ,2001), Okazaki Japan (poster)

2002

[258]Tamiki Komatsuzaki
A New Propensity Rule of Transitions in Chemical Reactions: Why and How Does a Reacting System Climb over the Saddle?
Japan-China International Conference on Theoretical Chemistry(4.20-4.21 ,2002), Kyoto Japan (invited)

[257]
Biological Physics Symposium(the celebration of 80th birthday of Prof. Hans Frauenfelder)(7.27-7.29 ,2002), Aspen Colorado, USA (participant)
organized by Robert Austin, David Pines and Peter Wolynes, Snowmass,

[256]Tamiki Komatsuzaki, R. Stephen Berry
A New Propensity Rule of Transitions in Chemical Reactions: Why and How does a Reacting System Climb over the Saddles?
The 6th World Congress of Theoretically Oriented Chemists (WATOC) 2002(8.4-8.9 ,2002), Lugano, Switzerland (contributed talk)

[255]Yasuhiro Matsunaga, Konstantin S, Kostov, Tamiki Komatsuzaki
Multi-Basin Dynamics in Off-Lattice Minimalist Protein Landscapes
The 6th World Congress of Theoretically Oriented Chemists (WATOC) 2002(8.4-8.9 ,2002), Lugano, Switzerland (poster)

2003

[254]
The 2nd Asian Joint Workshop for Protein Informatics(2.27-2.28 ,2003), Osaka, Japan (participant)

[253]Yasuhiro Matsunaga, Konstantin S. Kostov, Tamiki Komatsuzaki
Protein Folding Dynamics -Abnormal Diffusion and Hierarchical Regularity
The 30th NIPS International Symposium on "Frontiers of Biological Electron Microscopy - Proteins to Supramolecules"(3.12-3.15 ,2003), Okazaki(Japan) (poster)

[252]Kyoko Hoshino, Yasuhiro Matsunaga, Nobuyasu Koga, Shoji Takada, Tamiki Komatsuzaki
Non-stationarity and Non-Markovianity of Foldings in Small Proteins
The 30th NIPS International Symposium on "Frontiers of Biological Electron Microscopy - Proteins to Supramolecules" (3.12-3.15 ,2003), Okazaki(Japan) (poster)

[251]Tamiki Komatsuzaki
Hierarchical Regularities Buried in a Sea of Chaos: Chemical Reactions and Protein Foldings
The Workshop on Reaction Theory and Chaos(3.18-3.19 ,2003), Nara, Japan (invited talk)

[250]Tamiki Komatsuzaki
Regularity at Coarse Grained Scale of Protein Folding Dynamics & Reductionality of Dimensions to Capture Protein Folding Landscapes
Telluride Summer Workshop ’Energy Landscapes: Structure, Dynamics and Optimization Algorithms’(7.20-8.3 ,2003), Telluride, Colorado USA, 20 (contributed talk)
organized by Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz),

[249]Yasuhiro Matsunaga, Konstantin S. Kostov, Tamiki Komatsuzaki
Multi-Basin Dynamics in Off-Lattice Minimalist Protein Landscapes
Telluride Summer Workshop "Energy Landscapes: Structure, Dynamics and Optimization Algorithms"(7.20-8.3 ,2003), Telluride, Colorado USA

[248]Tamiki Komatsuzaki
Why can the system climb through the saddle from a basin to one another? Toward Unifying Reaction Rate Theories
Telluride Summer Workshop (7.27-8.3 ,2003), Telluride, Colorado USA (invited talk)
organized by David J. Wales(Univ. of Cambridge),

[247]Yasuhiro Matsunaga, Konstantin S. Kostov , Tamiki Komatsuzaki
Multi-Basin Dynamics in Off-Lattice Minimalist Protein Landscapes
Telluride Summer Workshop (7.27-8.3 ,2003), Telluride, Colorado USA (contributed talk)
organized by David J. Wales(Univ. of Cambridge)

[246]Yasuhiro Matsunaga
Ergodic behavior in Principal Component Space
Aspen Center for Physics' Small Workshop(8.11 ,2003) (contributed talk)
organized by R. Stephen Berry, Aspen, Colorado USA

[245]Kosntantin S. Kostov, Mikito Toda, Yasuhiro Matsunaga, Tamiki Komatsuzaki
Extracting Dynamical Information about Protein Folding from Time Series Analysis
226th ACS National Meeting(9.7-9.11 ,2003), New York, NY

[244]Yasuhiro Matsunaga, Konstantin S. Kostov, Tamiki Komatsuzaki
Multi-Basin Dynamics in Off-Lattice Minimalist Protein Landscapes
Satelite Symposium of Geometrical Structures of Phase Space in Multi-Dimensional Chaos : Applications to Chemical Reaction Dynamics in Complex Systems(10.20-10.25 ,2003), Kobe, Japan (invited talk)

[243]
JSPS-NSF Joint Seminar
Geometrical Structures of Phase Space in Multi-Dimensional Chaos : Applications to Chemical Reaction Dynamics in Complex Systems(10.26-11.1 ,2003), Kyoto (invited talk)

[242]Yasuhiro Matsunaga, Konstantin S. Kostov, Tamiki Komatsuzaki
Hierarchical Regularity in Multi-Basin Dynamics on Protein Landscapes
The 3rd International Symposium on Slow Dynamics in Complex Systems(11.3-11.8 ,2003), Sendai (contributed talk)

[241]Yasuhiro Matsunaga, Tamiki Komatsuzaki
Protein Folding Dynamics:Ergodic Behavior in Principal Component Space
The 3rd International Symposium on Slow Dynamics in Complex Systems(11.3-11.8 ,2003), Sendai (poster)

[240]Kyoko Hoshino, Yasuhiro Matsunaga, Mark Miller, David J. Wales, Tamiki Komatsuzaki
A Coarse-Graining of Energy Landscapes of Proteins -Structural Stability of the Most Stable States-
The 3rd International Symposium on Slow Dynamics in Complex Systems(11.3-11.8 ,2003), Sendai, 3-8 (poster)

2004

[239]Tamiki Komatsuzaki
What can a Single Molecule Time Series Data Tell Us? -Regularity in Structural Transitions on MultiBasin Energy Landscapes of Proteins-
Asian Symposium on Intense Laser Science (ASILS)(6.18-6.19 ,2004), Tokyo (invited talk)

[238]Tamiki Komatsuzaki
Regularity in Chaotic Transitions on Multi-Basin Energy Landscapes
CECAM Workshop on Energy Localization: From Small Polyatomic Molecules to Large BiomoleculesURL(9.6-9.8 ,2004), Lyon, France (invited talk)

[237]Tamiki Komatsuzaki
How can We Extract Dynamical Information from Time Series Data ?
Japan-U.S. workshop on Dynamical Foundation of Functions and Energy Transfer in Protein Systems(11.1-11.6 ,2004), Chicago, US, 1-6

[236]Chun Biu Li
Multi-dimensional reaction dynamics in chaotic chemical process
Workshop on "Chaos and Nonlinear Dynamics in Quantum-Mechanical and Macroscopic Systems" (12.8-12.10 ,2004), Kyoto (poster)

2005

[235]Chun Biu Li, Yasuhiro Matsunaga, Mikito Toda, Tamiki Komatsuzaki
Geometrical Structure of Phase Space for Chemical Reaction Dynamics: What Kinds of Molecular Motions are Associated with Phase Space Modes in Chaos?
International Symposium on Atoms, Molecules, and Clusters in Intense Laser Fields 2 (1.24-1.25 ,2005), Tokyo (poster)

[234]Tamiki Komatsuzaki
Dynamical Hierarchy of Transitions in Chemical Reactions and Protein Dynamics
Center for Integrative Multiscale Modeling and Simulation SeminarHP(7.21 ,2005), California Institute of Technology, Pasadena, California USA (invited talk)

[233]Tamiki Komatsuzaki
Complexity of Dynamics on Multidimensional Energy Landscapes in Chemical reactions & Proteins
Telluride Summer Workshop "Energy Landscapes: Dynamics and Optimization"URL(7.24-8.6 ,2005), Telluride, Colorado USA (invited talk)
organized by David J. Wales(Univ. of Cambridge),Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz)

[232]Akinori Baba, Tamiki Komatsuzaki
A construction of multidimensional free energy landscape from an ensemble of single molecule time series of biomolecules
Telluride Summer Workshop "Energy Landscapes: Dynamics and Optimization"URL(7.24-8.6 ,2005), Telluride, Colorado USA (contributed talk)
organized by David J. Wales(Univ. of Cambridge),Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz),

[231]Yasuhiro Matsunaga, Chun Biu Li, Tamiki Komatsuzaki
Time series analysis of collective motions in proteins
Telluride Summer Workshop "Energy Landscapes: Dynamics and Optimization"(7.24-8.6 ,2005), Telluride, Colorado USA (contributed talk)
organized by David J. Wales(Univ. of Cambridge),Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz),

[230]Chun Biu Li, Mikito Toda, Tamiki Komatsuzaki
Origin of Stochastic Transition on Multi-dimensional Energy Landscape
Telluride Summer Workshop "Energy Landscapes: Dynamics and Optimization"(7.24-8.6 ,2005), Telluride, Colorado USA (contributed talk)
organized by David J. Wales(Univ. of Cambridge),Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz),

[229]Chun Biu Li, Mikito Toda, Tamiki Komatsuzaki
Vibrational energy redistribution via geometrical structures in the multi-dimensional phase space of chemical reaction
Telluride Summer Workshop "Condensed Phase and Gas Phase Vibrational Dynamics"URL( ,2005), Telluride, Colorado USA 8, 6-13 (contributed talk)
organized by David M. Leitner (Univ. of Nevada) and Peter Hamm (University of Zurich),

[228]Tamiki Komatsuzaki
How does single molecule time series tell us about the underlying multidimensional free energy and state space landscapes?
Telluride Summer Workshop "Single Molecule Measurements: Theory and Experiment"(8.6-8.13 ,2005), Telluride, Colorado USA (contributed talk)
organized by Jianshu Cao (MIT),

[227]Tamiki Komatsuzaki
Dynamical Hierarchy in Transitions of Chemical Reactions: Definability of No-return Transition State
Workshop on "Critical stability of few-body quantum systems", the Max-Planck-Institut fur Physik Komplexer Systeme(10.16-10.22 ,2005), Dresden, Germany (invited talk)

[226]Chun Biu Li, Tamiki Komatsuzaki
Dynamical Hierarchy in Transitions of Chemical Reactions
International Symposium on Ultrafast Intense Laser Science 4HP(12.10-12.14 ,2005), Big Island, Hawaii

[225]Chun Biu Li, Yasuhiro Matsunaga, Mikito Toda, Tamiki Komatsuzaki
Geometrical structure of the multidimensional phase space transport in chemical reactions
Pacifichem 2005HP(12.15-12.20 ,2005), Honolulu, Hawaii

[224]Satoshi Noda, Akinori Baba, Tamiki Komatsuzaki
How does a polypeptide give rise to the helix-coil transition with interacting the surrounding water field?
Pacifichem 2005(12.15-12.20 ,2005), Honolulu, Hawaii

2006

[223]Tamiki Komatsuzaki
Water Field Dynamics in the Vicinity of Proteins
Center for Integrative Multiscale Modeling and Simulation Seminar(8.22 ,2006), California Institute of Technology, Pasadena, California USA

[222]Tamiki Komatsuzaki
A construction of the underlying free energy landscape from single molecule time series
Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan(11.12-11.16 ,2006), Okinawa (invited)

[221]Chun Biu Li, Tamiki Komatsuzaki
Extracting Dynamics from Time Series Data of Single Molecule Experiments on a Photon-by-Photon Basis
Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan(11.12-11.16 ,2006), Okinawa

[220]Kazuto Sei, Tamiki Komatsuzaki
Randomness and Memory in Single Molecule Time Series
Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan(11.12-11.16 ,2006), Okinawa

[219]Sachiko Sato, Akinori Baba, Tamiki Komatsuzaki
A Discrete Wavelet Time Series Analysis: The Hierarchy of Dynamics of Biomolecules
Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan (11.12-11.16 ,2006), Okinawa

[218]Tamiki Komatsuzaki
What can one learn about the underlying free energy landscape or dynamical structure from single molecule time series?
Discussion on 'Theory and simulation of biomolecular nano-machines'URL(12.12-12.16 ,2006), Maiko Villa, Kobe, 12-16 (invited)

[217]Akinori Baba, Tamiki Komatsuzaki
A Local ergodic state analysis of single molecule time series
Discussion on "Theory and simulation of biomolecular nano-machines"URL(12.12-12.16 ,2006), Maiko Villa, Kobe (poster)

[216]Chun Biu Li, Tamiki Komatsuzaki
Extracting Protein Conformational Dynamics on a Photon-by-Photon Basis in Single Molecule Electron Transfer
Discussion on "Theory and simulation of biomolecular nano-machines"URL(12.12-12.16 ,2006), Maiko Villa, Kobe (poster)

[215]Satoshi Noda, Akinori Baba, Tamiki Komatsuzaki
A Persistence of Long-Time Memory in Coarse-Grained Site-Velocity Field of Liquid Water
Discussion on "Theory and simulation of biomolecular nano-machines"URL(12.12-12.16 ,2006), Maiko Villa, Kobe (poster)

2007

[214]Tamiki Komatsuzaki
Dynamical Hierarchy of Transitions in Chemical Reactions
DYNAMICS OF COMPLEX SYSTEMS  - mathematical modeling, method and prediction -(on the celebration of 60th birthday of Profs. Y. Pesin and Y. Takahashi)(3.19-3.20 ,2007), Hokkaido University, Hokkaido, Japan (invited)

[213]Chun Biu Li
Detection of Phase Space Geometrical Structure Buried in Time Series
DYNAMICS OF COMPLEX SYSTEMS  - mathematical modeling, method and prediction -(on the celebration of 60th birthday of Profs. Y. Pesin and Y. Takahashi)(3.19-3.20 ,2007), Hokkaido University, Hokkaido, Japan (contributed talk)

[212]Tamiki Komatsuzaki
Multiple-Time-Scale State Network Topography buried in Single Molecule Time Series
Energy Landscapes: Negotiating the Black Diamonds(4.2-4.6 ,2007), Telluride, CO, USA, 2-6 (invited)

[211]Akinori Baba
How can One Extract Free Energy Landscapes from Single Molecule Time Series?
Energy Landscapes: Negotiating the Black Diamonds(4.2-4.6 ,2007), Telluride, CO, USA (contributed talk)

[210]Akira Shojiguchi, Chun-Biu Li, Tamiki Komatsuzaki, Mikito Toda
Fractional behavior in Hamiltonian Chaos Describing Reactions
THE THIRD SHANGHAI INTERNATIONAL SYMPOSIUM ON NONLINEAR SCIENCES AND APPLICATIONS(6.6-6.11 ,2007), Shanghai, China (contributed talk)

[209]Chun Biu Li, Akira Shojiguchi, Mikito Toda, Tamiki Komatsuzaki
The Dynamical Origin of Chemical Reactions: How and Why Systems can React from One State to the Other
THE THIRD SHANGHAI INTERNATIONAL SYMPOSIUM ON NONLINEAR SCIENCES AND APPLICATIONS(6.6-6.11 ,2007), Shanghai, China (contributed talk)

[208]Chun-Biu Li, Tamiki Komatsuzaki
Extracting Protein Conformational Dynamics on a Photon-by-Photon Basis in Single Molecule Experiments
THE THIRD SHANGHAI INTERNATIONAL SYMPOSIUM ON NONLINEAR SCIENCES AND APPLICATIONS(6.6-6.11 ,2007), Shanghai, China (contributed talk)

[207]Yasuhiro Matsunaga, Chun-Biu Li, Tamiki Komatsuzaki
Anomalous Diffusion in Folding Dynamics of Minimalist Protein Landscape
THE THIRD SHANGHAI INTERNATIONAL SYMPOSIUM ON NONLINEAR SCIENCES AND APPLICATIONS(6.6-6.11 ,2007), Shanghai, China (contributed talk)

[206]Kazuto Sei, Tamiki Komatsuzaki
Complex network extracted from single molecule time series: Dynamical structure in Kantorovich metric space
International Symposium on Molecular Theory for Real Systems(7.27-7.29 ,2007), Katsura, Kyoto (poster)

[205]Li Chun Biu, Tamiki Komatsuzaki
Capturing the multiple-time-scale dynamical state-network in the time series of single molecule experiments
ACS National Meeting: Single Molecule Spectroscopy, Imaging and Manipulation of Biomolecular Systems(8.19-8.23 ,2007), Boston (poster)

[204]Tamiki Komatsuzaki
Dynamical Hierarchy of Transitions in Chemical Reactions
Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions(8.13-8.24 ,2007), CO, USA (organizer's contributed talk)

[203]Tamiki Komatsuzaki
Multiple-Time-Scale State Space Landscape buried in Single Molecule Time Series
Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions(8.13-8.24 ,2007), CO, USA (organizer's contributed talk)

[202]Hiroshi Teramoto, Tamiki Komatsuzaki
Geometrical structure under bond selective chemistry
Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions(8.13-8.24 ,2007), CO, USA, 13-24 (contributed talk)

[201]Hiroshi Teramoto, Tamiki Komatsuzaki
The relation between the stable manifold stretched from NHIM and remnant structures
Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions(8.13-8.24 ,2007), CO, USA (contributed talk)

[200]Tamiki Komatsuzaki
What will we "talk with" nature?
The Complexity of Kinetics and Dynamics in Many Degrees of Freedom Systems(10.22-10.23 ,2007), Hokkaido (contributed talk)

2008

[199]Akinori Baba, Tamiki Komatsuzaki
Effective energy landscape from single molecule time series
the 9th RIES-Hokudai International Symposium, Creative Research Initiative 'Sousei'(1.27 ,2008), Sapporo (poster)

[198]Hiroshi Teramoto, Tamiki Komatsuzaki
A method to extract intermittent regular and chaotic behavior and their local properties from 1-dimensional time series
the 9th RIES-Hokudai International Symposium, Creative Research Initiative (1.27 ,2008), Sapporo (poster)

[197]Tamiki Komatsuzaki
Construction of an Effective Free Energy Landscape from Single-Molecule Time Series
1st Annual Protein and Peptide Conference, BIT's 4th Life Spring Forum on protein folding and diseases -celebrating 60 years of Prof. Scheraga's science (1948-2008)(4.22-4.24 ,2008), Shenzhen (invited)

[196]Li Chun Biu, Tamiki Komatsuzaki
Capturing the Multiple-Time-Scale Dynamical State-Space-Network in the Time Series of Single Molecule Experiment
1st Annual Protein and Peptide Conference(4.22-4.24 ,2008), Shenzhen (poster)

[195]Hiroshi Teramoto
Several properties of entanglement and intersection between stable and unstable manifold emanating from normally hyperbolic invariant manifold
Kyoto Dynamics Days 7 'Hamiltonian Systems and Related Topics'(6.26-6.28 ,2008), Kyoto (contributed talk)

[194]Tamiki Komatsuzaki
Extracting Multiscale Complex Network of Protein Fluctuation from Single-Molecule Time Series
Telluride Summer Workshop 'Characterizing Landscapes: From Biomolecules to Cellular Networks'(7.6-7.12 ,2008) (invited)
organized by Jianpeng Ma and Jin Wang

[193]Hiroshi Teramoto, Tamiki Komatsuzaki
Toward Understanding of Dynamical Origin of Mode-Selectivity in Complex Systems
The 2nd International Symposium on Molecular Theory for Real Systems(8.4-8.6 ,2008), IMS, Okazaki (poster)

[192]S. Kawai, T. Komatsuzaki
Reaction dynamics in condensed phase - Determinacy of the reaction in a noisy environment-
STEREODYNAMICS 2008(10.13-10.18 ,2008), China (poster)

[191]S. Kawai, C.-B. Li, T. Komatsuzaki, T. Yamashita, Y. Fujimura, M. Toda
Dimension reduction for the analyses of reaction dynamics of O(1D)+N2O -> NO+NO
STEREODYNAMICS 2008(10.13-10.18 ,2008), China (hot topic talk)

[190]Chun Biu Li
On the search of new mathematical frameworks to unveil the multiscale dynamics of complex systems
Workshop on Interfacial dynamics on the boundaries of physics, chemistry, biology and mathematics(11.20 ,2008), Hokkaido (invited)

[189]Hiroshi Teramoto
Folding patterns of stable/unstable manifolds in multi-dimensional systems
Workshop on Interfacial dynamics on the boundaries of physics, chemistry, biology and mathematics(11.20 ,2008), Hokkaido (invited)

[188]Tamiki Komatsuzaki
Multiscale Complex Network and Effective Free Energy Landscape Extracted from Single-Molecule Time Series
Symposium on Linking single molecule spectroscopy and energy landscape perspectives(12.3-12.5 ,2008), Fukuoka (organizer's talk)
organized by Tamiki Komatsuzaki(Hokkaido University, Japan) Haw Yang (Lawrence Berkeley National Laboratory, USA) at 46th Annual Meeting of the Biophysical Society of Japan

[187]Tamiki Komatsuzaki
What can we learn about the mechanism of complexity in kinetics and dynamics from scalar time series?
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (organizer's talk)
organized by Satoshi Takahashi (Osaka Univ., Japan), Masaru Kawakami (JAIST, Japan), Tamiki Komatsuzaki(Hokkaido Univ., Japan)

[186]Chun Biu Li
Data-driven Modeling of Single Mechanosensitive Ion Channels from Time Series Analysis
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (invited talk)

[185]Akinori Baba, Tamiki Komatsuzaki
Multidimensional energy landscape from single molecule time series
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (poster, poster award)

[184]Kazuya Fujimoto, Masahito Kinoshita, Kiyoto Kamagata, Yuji Goto, Yoshihiro Sambongi, Akinori Baba, Tamiki Komatsuzaki, Satoshi Takahashi
Denatured state dynamics of cytochrome c551 observed by single molecule fluorescence intensity measurements
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (poster, poster award)

[183]Kazuto Sei, Li Chun Biu, Tamiki Komatsuzaki
Toward the understanding of the gating dynamics for the mechanosensitive ion channel
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (poster)

[182]Hiroshi Teramoto, Tamiki Komatsuzaki
Elucidation of mode-selectivity of biomolecule
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (poster)

[181]S. Kawai, T. Komatsuzaki
Determinism and Fluctuation of Chemical Reactions under Noisy Environment
The 10th RIES-Hokudai International Symposium on(12.8 ,2008), Sapporo (poster)

2009

[180]Tamiki Komatsuzaki
Extracting Multiscale Complex Network of Protein Fluctuation from Single-Molecule Time Series
Single Molecule Biophysics Winter Workshop 2009(1.4-1.10 ,2009), Aspen Center for Physics, CO USA (contributed talk and poster)

[179]K. Sei, C. Li, T. Nomura, H. Tatsumi, T. Komatsuzaki
Data-driven time series analysis of Mechanosensitive ion channel gating dynamics
6th Asian Biophysics Association (ABA) Symposium & 27th Hong Kong Society of Neuroscience Annual Meeting(1 ,2009), Hong Kong, China (poster)

[178]C. Li
Complex multi-scale networks of protein fluctuation dynamics from single-molecule time series
6th Asian Biophysics Association (ABA) Symposium & 27th Hong Kong Society of Neuroscience Annual Meeting(1 ,2009), Hong Kong, China

[177]Chun Biu Li
Multiscale Networks of Interacting Biological Systems: From network constructions to causality among them
Sapporo Winter School(2.10-2.14 ,2009), Hokkaido University (poster)

[176]Hiroshi Teramoto
Folding patterns of stable/unstable manifolds in high dimensional dynamical systems
Sapporo Winter School(2.10-2.14 ,2009), Hokkaido University (poster)

[175]Tamiki Komatsuzaki
Chance and Necessity in Changes of States
Department of Physics seminar(2.23 ,2009), ENS de Lyon, Lyon, France (invited)

[174]Tamiki Komatsuzaki
Exploring remnants of invariants buried in a deep potential well in chemical reactions
Focus Session: The Transition State in Physics, Chemistry, and Astrophysics,APS Meeting(3.16-3.20 ,2009), Pittsburgh, Pennsylvania (invited)

[173]Akinori Baba, Tamiki Komatsuzaki
Construction of an Effective Free Energy Landscape from Single-Molecule Time Series
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (poster)

[172]Shinnosuke Kawai, Tamiki Komatsuzaki
Determinism and fluctuation in condensed phase chemical reactions
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (poster)

[171]Kazuto Sei, Chun Biu Li, Tamiki Komatsuzaki
Time series analysis of mechanosensetive ion channel dynamics
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (poster)

[170]Chun Biu Li, Mikito Toda, Tamiki Komatsuzaki
Does No-return Transition State always exist above the Reaction Threshold?
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (poster)

[169]Akinori Baba, Tamiki Komatsuzaki
Free energy landscape from single molecule time series of biomolecules
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (invited)

[168]Tamiki Komatsuzaki
Multiscale Complex Network and Effective Free Energy Landscape extracted from Single-Molecule Time Series
Telluride Workshop on Single Molecule Dynamics(6.22-6.26 ,2009), Telluride, CO USA (invited)

[167]Tamiki Komatsuzaki
Free Energy Landscape for Single Molecule
Telluride Workshop on The Complexity of Dynamics and Kinetics in ManyDimensions(6.29-7.3 ,2009), Telluride, CO USA (organizer's talk)

[166]Chun Biu Li
Data-driven Multiscale Modeling of Single Molecule Experiments from Time Series Analysis
International Symposium 'Innovative Nanoscience of Supermolecular Motor Proteins'(9.8-9.10 ,2009), Kyoto (poster)

[165]Mesfin Asfaw, Wokyung Sung
Stochastic resonance of flexible Polymer
International Symposium 'Innovative Nanoscience of Supermolecular Motor Proteins'(9.8-9.10 ,2009), Kyoto (poster)

[164]Tamiki Komatsuzaki
Dynamical Origin of Change of States in Chemical Reactions and Conformation Changes--Toward Biological Functions under Thermal Fluctuation
RIES-CIS Mini-workshop on Nano/Bio/Quantum Science(12.10 ,2009), National Chiao Tung University, Taiwan (invited)

2010

[163]S. Kawai, T. Komatsuzaki
Time-dependent quantum normal form and control of chemical reactions
International Symposium on Molecular Theory for Real Systems(1 ,2010), Kyoto (poster)

[162]S. Kawai, T. Komatsuzaki
Nonlinear dynamics of chemical reactions in thermal fluctuating environments
International Symposium on Molecular Theory for Real Systems(1 ,2010), Fukui Institute for Fundamental Chemistry, Kyoto University (contributed poster)

[161]Tamiki Komatsuzaki, Chun-Biu Li, Akinori Baba
Extracting Complex Network and Effective Free Energy Landscape of Protein Fluctuation From Single Molecule Time Series
Biophysical Society 54th Annual Meeting(2.10-2.24 ,2010), San Francisco,Calofornia, 20-24 (poster)

[160]T. Komatsuzaki
Extracting a Multidimensional Free Energy Landscape from a Scalar Single-Molecule Time Series
International Symposium on Joint Research Network on Advanced Materials and Devices 'Chou'(3 ,2010), Tomakomai, Hokkaido (invited)

[159]Akinori Baba, Tamiki Komatsuzaki
Multidimensional Energy Landscapes in Single MoleculeBiophysics
International Symposium on Joint Research Network on Advanced Materials and Devices 'Chou'(3 ,2010), Tomakomai, Hokkaido (poster)

[158]Chun Biu Li, Haw Yang, Tamiki Komatsuzaki
Extracting and Quantifying the Multiscale Complex Networks Constructed from Single-Molecule Time Series
International Symposium on Joint Research Network on Advanced Materials and Devices 'Chou'(3 ,2010), Tomakomai, Hokkaido (poster)

[157]Hiroshi Teramoto, Tamiki Komatsuzaki
Roles of water molecules for structural transitions of solute molecules
International Symposium on Joint Research Network for Advanced Material and Devices 'Chou'(3 ,2010), Tomakomai, Hokkaido (poster)

[156]Tamiki Komatsuzaki
Energy Landscapes for Single-Molecules
Telluride Summer Workshop 'Characterizing Landscapes: From Biomolecules to Cellular Networks'(6.14-6.18 ,2010) (invited)

[155]Tamiki Komatsuzaki
The dynamic origin of reactions under thermal fluctuation: true reaction coordinate
Telluride Summer Workshop'Searching for Reaction Coordinates and Order Parameters'(6.21-6.25 ,2010) (invited)
organized by Ron Elber

[154]Tamiki Komatsuzaki
Extracting the Underlying Energy Landscape from a Single-Molecule Time Series
Gordon Conference on Single Molecule Approaches to Biology(6.27-7.2 ,2010), Italy (poster)

[153]Tamiki Komatsuzaki, Chun Biu Li, Shinnosuke Kawai
Robustness and diversity of transitions in a sea of chaos and stochastic fluctuation
International Conference of Numerical Analysis and Applied Mathematics(9.19-9.25 ,2010), Greece (invited)

2011

[152]T. Komatsuzaki
Chance and necessity in reactions under thermal fluctuation
James Franck Institute Seminar(2.15 ,2011), The University of Chicago (invited)

[151]T. Komatsuzaki
Mining State Space Network from Single-Molecule Time Series
Telluride Workshop on Complexity of Kinetics and Dynamics in Many Dimension(6.20-6.24 ,2011) (invited)

[150]CB Li
Either contruction of KS from dwell-time time series, or modeling of QD blinking
Telluride Workshop on Complexity of Kinetics and Dynamics in Many Dimension(6.20-6.24 ,2011) (invited)

[149]S Kawai, H.Tetemoto, T.Komatsuzaki
Reaction dynamics of complex systems analyzed by Langevin type framework
Telluride Workshop on Complexity of Kinetics and Dynamics in Many Dimension(6.20-6.24 ,2011) (invited)

[148]T. Komatsuzaki
"Digging" single molecule time series to "mine" the underlying effective energy landscape
Telluride Workshop on Single Molecule Dynamics(6.27-7.1 ,2011) (invited)

[147]CB Li
Multiscale Time Series Analysis of Supermolecular Motor Proteins on the Single Molecule Level
Telluride Workshop on Single Molecule Dynamics(6.27-7.1 ,2011) (invited)

[146]T. Komatsuzaki
How can we "mine" effective energy landscapes of proteins from single molecule time series in the violation of local equilibrium and detailed balance?
Telluride Workshop on Exploring energy landscapes, from single molecules to mesoscopic models(7.25-8.5 ,2011) (invited)

[145]T. Komatsuzaki
"Mining" an effective Energy landscape of a protein from single molecule time series
Telluride Workshop on Protein Dynamics(8.1-8.5 ,2011) (invited)

[144]S. Kawai, H. Teramoto, T. Komatsuzaki
Low-dimensional Description of Complex Many-Body Molecular Systems by Extracting Important Dynamical Modes
14th Asian Chemical Congress(9.8 ,2011), The Queen Sirikit National Convention Center, Bangkok (invited)

[143]T. Komatsuzaki
Mining the underlying free energy landscapes of biomolecules from single molecule time series
(9.16 ,2011), Department of Biology, Muenster University (Germany)

[142]Naoki Miyagawa, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Spatial Heterogeneity of Multivariate Dependence
International Conference of Numerical Analysis and Applied Mathematics(9.19-9.25 ,2011), Greece (invited)

[141]Tahmina Sultana, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Extracting the reaction network buried in Single Molecule Time Series of Epidermal Growth Factor Receptor and Growth Factor Receptor-Bound Protein 2
12th RIES-Hokudai International Symposium (11.21-11.22 ,2011), Chateraise Gateaux Kingdom Sapporo (poster)

[140], Chun Biu Li, Tamiki Komatsuzaki
"EXTRACTING THE MOST UNBLIASED KINETIC SCHEME FROM SINGLE MOLECULE TIME" "Bio-inspired approaches:Micro- & Nano- Architectures, Materials & Imaging"
FRANCE-JAPAN WORKSHOP(10.11-10.12 ,2011), Institut Europeen de Chimie et Biologie - Bordeaux (poster)

[139]T. Komatsuzaki
Mining an effective Energy landscape of a protein from single molecule time series
17th International Biophysics Congress(10.30-11.3 ,2011) (oral)

[138]Chun-Biu Li, Tamiki Komatsuzaki
Data-driven modeling of the complex dynamics and kinetics of single motor protein
17th International Biophysics Congress(10.30-11.3 ,2011) (poster)

[137]Yutaka Nagahata, Shinnosuke Kawai, Hiroshi Teramoto, Chun-Biu Li, Tamiki Komatsuzaki
Deterministic properties of a saddle with two reactive degrees-of-freedoms
12th RIES-Hokudai International Symposium (11.21-11.22 ,2011), Chateraise Gateaux Kingdom Sapporo (poster)

[136]Naoki Miyagawa, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Extracting many-body interaction laws from an observation
12th RIES-Hokudai International Symposium (11.21-11.22 ,2011), Chateraise Gateaux Kingdom Sapporo (poster)

2012

[135]Tamiki Komatsuzaki
Theories Should Meet Measurements: What Can We Extract from Time Series Data?
The 2012 WPI-AIMR Annual Workshop(2.22 ,2012), Sendai International Center (invited)

[134]Tahmina Sultana, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Extracting the Reaction Network Buried in Single Molecule Time Series of Epidermal Growth Factor Receptor (EGFR) and Growth Factor Receptor-Bound Protein 2 (Grb2) in Cytoplasm
IGP International Symposium 2012(3.2 ,2012), Hokkaido University (oral)

[133]H.Teramoto
Analysis of dynamical systems with large degrees of freedom in terms of hyperbolic invariant manifolds and their breakdown
International symposium on anomalous statistics, generalized entropies, and information geometry NEXT2012Nara, Memorial Hall (3.7 ,2012), Nara Women's University (invited)

[132]Chun-Biu Li
An information theoretic approach to dynamical irreversibility from time series
Dynamics of complex systems(3.7 ,2012), Hokkaido University (invited)

[131]Tamiki Komatsuzaki
The dynamical origin of reactions: why and how does a system change its state?
Dynamics of complex systems(3.7 ,2012), Hokkaido University (invited)

[130]Shinnosuke Kawai
Dynamics of Molecules Analyzed by the Generalized Langevin Equation
Dynamics of complex systems(3.8 ,2012), Hokkaido University (invited)

[129]Naoki Miyagawa
Many-body Correlation in Pattern Formation and its Decomposability
Quantitative Developmental Biology(3.26 ,2012), RIKEN Center for Developmental Biology (CDB) (poster)

[128]Chun-Biu Li
Data-Driven Modeling of the Complex Kinetics and Dynamics from Single Protein Motor Rotation Experiments
Quantitative Developmental Biology(3.26 ,2012), RIKEN Center for Developmental Biology (CDB) (poster)

[127]Tamiki Komatsuzaki
Theories Should Meet Experiments: Let the system speak for itself!
Max Planck Institute Seminar(4.24 ,2012), Stuttgart (invited)

[126]Tamiki Komatsuzaki
Theories Should Meet Experiments: What Can We Extract from Time Series Data?"
Telluride Summer Workshop 'Characterizing Landscapes: From Biomolecules to Cellular Networks'(6.11-6.15 ,2012) (invited)

[125]Tamiki Komatsuzaki
Transition States and Reaction Coordinates in Complex Systems"
Telluride Summer Workshop 'Searching for Reaction Coordinates and Order Parameters'(6.17-6.21 ,2012) (invited)

[124]Kawai, S., Mootz, H.D., Yang, H., Komatsuzaki, T.
Constructing unbiased estimators for arbitrary probability distribution
12th Annual Awardees Meeting(7.1-7.4 ,2012), Daegu (Korea) (poster)

[123]Tamiki Komatsuzaki
Theories should meet measurements: What can we extract from data?
Paradigm Innovation in Biology: novel strategy and thinking(10.16-10.19 ,2012), Academia Sinica, Taipei (invited)

[122]Shinnosuke Kawai, Tamiki Komatsuzaki
Construction of "Optimal" Estimators for Arbitrary Probability Distributions
Paradigm Innovation in Biology: novel strategy and thinking(10.16-10.19 ,2012), Academia Sinica, Taipei (poster)

[121]Tamiki Komatsuzaki
Phase space geometry in chemical reaction dynamics: revisiting the concept of reaction coordinate
(10.19 ,2012), Department of Chemistry, National Chiao Tung University, HsinChu, Taiwan (invited)

[120]Shinnosuke Kawai, Tamiki Komatsuzaki
Finding Essential Coordinate to Disentangle the Reaction Dynamics of High Dimension
(10.19 ,2012), Informal seminar in Department of Chemistry, National Chiao Tung University, HsinChu, Taiwan (oral)

[119]Tamiki Komatsuzaki
Toward deciphering reality of molecular dynamics in systems biology
RIES - CIS Joint Symposium(10.25 ,2012), Sapporo (invited)

[118]Tamiki Komatsuzaki
Deciphering complex hierarchical living systems in single molecule biology
2nd Discussion Symposium on Artificial Life and Biomimetic Functional Materials(12.11 ,2012), Sapporo (invited)

[117]Shinnosuke Kawai, Hiroshi Teramoto, Tamiki Komatsuzaki
Effect of Time Scales on the Essential Dimensionality of a Dynamical System
The 13th RIES-Hokudai International Symposium (12.13-12.14 ,2012), Chateraise Gateaux Kingdom, Sapporo, Japan (poster)

[116]Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Extracting quasi-normally repelling material surface by re-formulating variational Lagrangian coherent structure(LCS) theory
The 13th RIES-Hokudai International Symposium (12.13-12.14 ,2012), Chateraise Gateaux Kingdom, Sapporo, Japan (poster)

2013

[115]Chun Biu Li
Time Series, Networks and Dynamics: A Perspective from the Information Theory
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (invited, oral)

[114] Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Relation between dynamics of individual trajectories and that of their ensemble distributions -Spectral Analysis of Individual Trajectories-
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[113]J. N. Taylor, Chun Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
An Information-Theoretical Approach to Local Equilibrium State Analysis for Single-Molecule Time-Series
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[112]Tahmina Sultana, Hiroaki Takagi, Miki Morimatsu, Hiroshi Teramoto, Chun Biu Li, Yasushi Sako, Tamiki Komatsuzaki
Scrutiny of Heterogeneity in Memory by Extracting Reaction Network Buried in Single Molecule Time Series of EGFR and Grb2
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[111]Yutaka Nagahata, Hiroshi Teramoto, Takashi Horiyama, Chun Biu Li, Tamiki Komatsuzaki
Toward understanding hierarchical structure of complex reaction networks extracted from single molecule time series
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[110]Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Coherent dynamics in colloidal fluids in terms of Lagrangian Coherent Structures (LCSs)
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[109]Naoki Miyagawa, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Information of multi-order correlation in pattern formation
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[108]Kunihiko Ibe, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Extracting the Protein-folding Dynamics from Single Molecule Time Series
The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[107]Shinnosuke Kawai, Hiroshi Teramoto, Tamiki Komatsuzaki
Essential Coordinates to Describe the Dynamics of Many-atom Systems
5th JCS International Symposium on Theoretical Chemistry(12. 2-12. 6 ,2013), Todai-ji Culture Center , Nara, Japan 12, 3 (invited, poster)

[106]Chun-Biu Li, Tamiki Komatsuzaki
Toward the Decoding of Single Nucleotides Tunneling Current by Change Point Analysis
G3meeting,Academia Sinica(10.21-10.22 ,2013) (Poster)

[105]James N. Taylor, Shinnosuke Kawai, Chun Biu Li, Tamiki Komatsuzaki
Let Systems Tell for themselves: Energy Landscape and Complex Network
G3meeting,Academia Sinica(10.21-10.23 ,2013), Taipei, Taiwan

[104]Chun-Biu Li
When Computational Mechanics Meets Single Molecule Time Series
2013 International Symposium on Nonlinear Theory and its Applications(9.8-9.11 ,2013), Santa Fe Community Convention Center, Santa Fe , US (invited, Oral)

[103]Mootz, H.D., Komatsuzaki, T, Yang, H., Sun, X., Morrell, T.E., Rafalska-Metcalf, I.U., Alfermann
Dynamical Conformation Coordinations in Non-Ribosomal Peptide Synthetases
HFSP 2013 Awardees Meeting ,The Palais de la Musique et des Congres (PMC)(7.7-7.10 ,2013), Strasbourg, France (Poster)

[102]Tamiki Komatsuzaki
Revisiting Energy Landscape, Timescale, Coarse-Graining
Chemistry and Dynamics in Complex Environments(6.25-6.29 ,2013), Telluride Intermediate School, Telluride, CO., US (invited, Oral)

[101]Hiroshi Teramoto
Coherent Dynamics in Colloidal Fluids in terms of Lagrangian Coherent Structure
The Complexity of Dynamics and Kinetics in Many Dimensions(6.16-6.20 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral)

[100]Yutaka Nagahata, Hiroshi Teramoto, Chun-Biu Li, Tamiki Komatsuzaki
Identifying states in Markov chain steady state network extracted from time series by finding minimum transition probability
The Complexity of Dynamics and Kinetics in Many Dimensions(6.18 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral)

[99]Chun-Biu Li
Does Dynamic Disorder Exist in the Enzymatic Reactions on the Single Molecule Level?
The Complexity of Dynamics and Kinetics in Many Dimensions(6.16-6.17 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral)

[98]Tamiki Komatsuzaki
Revisiting Energy Landscape & Extracting it from FRET measurement
The Complexity of Dynamics and Kinetics in Many Dimensions(6.16-6.20 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral)

[97]Tamiki Komatsuzaki
Phase Space Geometrical Aspects in Condensed Phase Reactions
Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases (6.10-6.14 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral)

[96]Yutaka Nagahata, Hiroshi Teramoto, Chun-Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
Reactivity Boundaries to Separate the Fate of a Chemical Reaction Associated with Multiple Saddles
Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases ,Telluride Intermediate School(6.13 ,2013), Telluride, CO., US (Oral)

[95]Hiroshi Teramoto
Breakdown of Normally Hyperbolic Invariant Manifolds, its Consequences and Quantum Manifestation
,Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases(6.12 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral)

[94]Hiroshi Teramoto
Detecting and analyzing methods of normally hyperbolic invariant manifolds
XXXⅢ Dynamics Days Europe-Madrid 2013(6.3-6.7 ,2013), Madrid, Spain (invited, Oral)

[93]Shinnosuke Kawai, David Cooper, Christy Landes, Henning D. Mootz, Haw Yang, Tamiki Komatsuzaki
Unbiased estimation of physical properties in noisy experimental data
IMS Workshop on "Hierarchical Molecular Dynamics: From Ultrafast Spectroscopy to Single Molecule Measurements"(5.25-5.26 ,2013), NINS Okazaki Conference Center, Okazaki, Aichi, Japan (Poster)

[92]Tamiki Komatsuzaki
A microscopic ruler tells us the underlying networks in single molecule measurements
Nanoscale Science Seminars 2013:A Microscopic ruler tells us the underlying networks in single molecule measurements(5.13 ,2013), Max Planck Institute, Stuttgart, Germany (invited, Oral)

[91]Hiroshi Teramoto
Detecting and analyzing methods of normally hyperbolic invariant manifolds
Illuminating 2013: Dynamical Perspectives on Molecular Processes(5.8-5.10 ,2013), Loughborough University, , Loughborough, Leicestershir, UK (invited, Oral)

[90]Tamiki Komatsuzaki
Toward Deciphering Molecular Individuality in Systems Biology
French‐Japanese Seminar on 'Bioinspired Methods and Applications'(2.4-2.6 ,2013), Embassy of France, Tokyo and LIMMS, Institute of Industrial Science, Tokyo University, Japan (invited, Oral)

[89]Chun Biu Li, Tamiki Komatsuzaki
Toward deciphering molecular individuality in systems biology
Gordon Conference on Stochastic Physics in Biology: Foundations and Current Trends(1.13-1.18 ,2013), Ventura, CA, US (Poster)

[88]Tamiki Komatsuzaki
Let Single Molecule Time Series Tell for Itself: Energy Landscape and Complex Network
4-th France-Japan Joint Seminar: Imaging of spatiotemporal hierarchies in living cells? an overview of dynamics from molecules to cells ?(1.7-1.11 ,2013), RIKEN Harima Institute / SPring-8 / SACLA,Sayo-gun, Hyogo, Japan (invited, Oral)

[87]Tamiki Komatsuzaki
Let Single Molecule Time Series Tell for Itself: Energy Landscape and Complex Network
4-th France-Japan Joint Seminar: Imaging of spatiotemporal hierarchies in living cells? an overview of dynamics from molecules to cells ?( ,2013), RIKEN Harima Institute / SPring-8 / SACLA,Sayo-gun, Hyogo, Japan 1, 7-11 (invited, Oral)

2014

[86]Satoru Tsugawa, Chun-Biu Li, Tamiki Komatsuzaki
An extraction method of local microtubule alignments in Arabidopsis sepal
The 15th Ries-Hokudai International Symposium 響[hibiki](12.16-12.17 ,2014), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12, 16 (poster)

[85]J.N. Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
The 15th Ries-Hokudai International Symposium 響[hibiki](12.16-12.17 ,2014), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12, 16 (poster)

[84]Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
Temperature Dependency of Molecular Motor
The 15th Ries-Hokudai International Symposium 響[hibiki](12.16-12.17 ,2014), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12, 16 (poster)

[83]Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki
An extraction of embedded timescale hierarchies buried in complex reaction network
The 15th Ries-Hokudai International Symposium 響[hibiki](12.16-12.17 ,2014), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12, 16 (poster)

[82]Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Joseph Z. Terdik, Norbert F. Scherer, Tamiki Komatsuzaki
Local-heterogeneous responses and transient dynamics in colloidal fluids
The 15th Ries-Hokudai International Symposium 響[hibiki](12.16-12.17 ,2014), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12, 16 (poster)

[81] Tamiki Komatsuzaki
A kinetic disconnectivity graph to decode timescale hierarchy buried in reaction networks
XIXth International Workshop on Quantum Systems in Chemistry, Physics and Biology(11.11-11.17 ,2014), Fullon Hotel Tamsui Fishermen's Wharf, New Taipei City, Taiwan 11, 16 (invited, oral)

[80]Satoru Tsugawa
Toward extraction of global coordination despite local variability in plant development
New Challenges in Complex Systems Science(10.24-10.26 ,2014), Nishiwaseda Campus, Waseda University, Tokyo, Japan 10, 25 (poster)

[79]Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
Data Driven Approach to Dynamics of Protein Motor
New Challenges in Complex Systems Science(10.24-10.26 ,2014), Nishiwaseda Campus, Waseda University, Tokyo, Japan 10, 25 (poster)

[78]Chun Biu Li
Challenges in Understanding Complex Systems at the Single Molecule Level
New Challenges in Complex Systems Science(10.24-10.26 ,2014), Nishiwaseda Campus, Waseda University, Tokyo, Japan 10, 25 (invited, oral)

[77] Tamiki Komatsuzaki
Chemical Reaction Dynamics and Chaos
New Challenges in Complex Systems Science(10.24-10.26 ,2014), Nishiwaseda Campus, Waseda University, Tokyo, Japan 10, 24 (invited, oral)

[76] Tamiki Komatsuzaki
A Dynamical Switching of Reactive Mode ⇔ Nonreactive Mode at High Energies for a Hydrogen Atom in Crossed Electric and Magnetic Fields
11th Asian International Seminar on Atomic and Molecular Physics(10.5-10.10 ,2014), Katahira Campus, Tohoku University, Sendai, Miyagi 10, 8 (invited, oral)

[75]Hiroshi Teramoto
Extracting coherent molecular vibrational modes by nonlinear time series analysis
Workshop on Theory and Applications of Random/Non-autonomous Dynamical Systems(9.8-9.15 ,2014), Dynamical Systems Group, Department of Mathematics, Imperial College London, London, UK 9, 11 (invited, oral)

[74]Satoru Tsugawa
Toward extraction of mechanical properties in plant cell growth
Workshop "What kinds of dynamical feature can we extract from data?"(8.27-8.28 ,2014), Niseko town center, Niseko, Hokkaido 8, 27 (oral)

[73]Hiroshi Teramoto
Extracting molecular coherent vibrational modes by nonlinear time series analysis
Workshop "What kinds of dynamical feature can we extract from data?"(8.27-8.28 ,2014), Niseko town center, Niseko, Hokkaido 8, 27 (oral)

[72]Nick Taylor
Extracting Free Energy Landscapes from Noisy Single-Molecule
Workshop "What kinds of dynamical feature can we extract from data?"(8.27-8.28 ,2014), Niseko town center, Niseko, Hokkaido 8, 27 (oral)

[71] Tamiki Komatsuzaki
Energy landscapes learned from time series and networks
Energy Landscapes : From Single Molecules to Soft Matter(8.15-8.21 ,2014), Durham University, Durham, UK 8, 20 (invited, oral)

[70] Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Reaction Coordinate Switching Mechanism, on the Possibility of Its Experimental Verification and Its Quantum Manifestation
The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications(7.7-7.11 ,2014), Universidad Autónoma de Madrid, Madrid, Spain 7, 8 (invited, oral)

[69]Tamiki Komatsuzaki
Chance and Necessity in Reactions Under Chaos and Stochastic Fluctuation
The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications(7.7-7.11 ,2014), Universidad Autónoma de Madrid, Madrid, Spain 7, 7 (invited, oral)

[68]Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
Macromolecular dynamics: structure, function and diseases(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 7, 3 (oral)

[67]Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Extracting Cooperative modes between a biological molecule and water molecules
International Workshop "Over the Barriers of Transition Paths: Dynamical Processes in Proteins and Complex Molecular Systems"(6.28 ,2014), Tokyo Institute of Technology, Yokohama, Kanagawa 6, 28 (invited, oral)

[66] Tamiki Komatsuzaki
Energy Landscapes Constructed From Single-molecule Time Series And Reaction Networks
Macromolecular dynamics: structure, function and diseases(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 6, 27 (invited, oral)

[65] Tamiki Komatsuzaki
Theories Should Meet Experiments: What Can We Extract From Time Series Data?
CSRC Seminar(6.23 ,2014), Beijing Computational Science Research Center (CSRC), Beijing, China 6, 23 (invited, oral)

[64]Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
ICBP 8th IUPAP international conference on biological physics(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 6, 21 (oral)

[63] Tamiki Komatsuzaki
Energy Landscapes Constructed From Single-Molecule Time Series and Reaction Networks
The 2014 Les Houches - TSRC Protein Dynamics Workshop(5.18-5.23 ,2014), Ecole de Physique des Houches, Les Houches, France 5, 21 (invited, oral)

[62]Nag Preetom
Extracting cage breaking motion and dynamical heterogeneity in colloidal fluids in terms of Lagrangian Coherent Structures (LCSs)
Workshop on Lagrangian Coherent Structures and Dynamical Systems(3. 5-3. 7 ,2014), Hokkaido University, Sapporo, Japan 3, 7 (oral)

[61] Hiroshi Teramoto
Transportation barriers in dynamical systems
Workshop on Lagrangian Coherent Structures and Dynamical Systems(3. 5-3. 7 ,2014), Hokkaido University, Sapporo, Japan 3, 7 (oral)

2015

[60]Tamiki Komatsuzaki
Toward deciphering cell individuality in systems biology
Symposium #137 Life at Small Copy Numbers (The 2015 International Chemical Congress of Pacific Basin Societies)(12.19-12.20 ,2015), Sheraton Waikiki, Hawaii, USA 12, 20 (invited, oral)

[59]Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images
Symposium #121 Deciphering molecular complexity from protein functions to cellular network (The 2015 International Chemical Congress of Pacific Basin Societies)(12.15-12.16 ,2015), Convention Center, Hawaii, USA 12, 16 (oral)

[58]Tamiki Komatsuzaki
Energy landscapes and conformation network learned from single molecule time series
Symposium #121 Deciphering molecular complexity from protein functions to cellular network (The 2015 International Chemical Congress of Pacific Basin Societies)(12.15-12.16 ,2015), Convention Center, Hawaii, USA 12, 15 (invited, oral)

[57]Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Dynamical Reaction Theory: Beyond the conventional perturbation theory
Colloquium on kinetics and scattering theory for astrophysics (Nov 26-27) (in a part of the extended workshop “Theory of Gas Phase Scattering and Reactivity for Astrophysics(Nov 23-Dec 8)” along COST ‘Our chemical History’Action CM1401)(11.16-11.27 ,2015), Max Planck Institute of Colloids and Interfaces, Potsdam, Germany 11, 27 (invited, oral)

[56]Tamiki Komatsuzaki
Phase Space geometry and Chemical Reaction Dynamics: Past, Present, and Future
Colloquium on kinetics and scattering theory for astrophysics (Nov 26-27) (in a part of the extended workshop “Theory of Gas Phase Scattering and Reactivity for Astrophysics(Nov 23-Dec 8)” along COST ‘Our chemical History’Action CM1401)(11.16-11.27 ,2015), Max Planck Institute of Colloids and Interfaces, Potsdam, Germany 11, 27 (invited, oral)

[55]Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Tetsuya Taketsugu, Tamiki Komatsuzaki
Developing high precision algorithm to predict observation timescale hierarchy of an isomerization reaction network
The 16th RIES-Hokudai International Symposium(11.10-11.11 ,2015), Chateraise Gateaux Kingdom Sapporo, Sapporo, Japan 11, 10 (Poster)

[54]Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Classification and Control of electron energy level crossings in terms of the theory of singularity
The 16th RIES-Hokudai International Symposium(11.10-11.11 ,2015), Chateraise Gateaux Kingdom Sapporo, Sapporo, Japan 11, 10 (Poster)

[53]Genming Wang, Chun-Biu Li, Hitoshi Tatsumi, Tamiki Komatsuzaki
Kinetics of Multiple conductance levels of Mechanosensitive Ion Channel
The 16th RIES-Hokudai International Symposium(11.10-11.11 ,2015), Chateraise Gateaux Kingdom Sapporo, Sapporo, Japan 11, 10 (Poster)

[52]Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
The Onset of Non-equilibrium Effects at High Temperature in the Reaction Kinetics of F1-ATPase
The 16th RIES-Hokudai International Symposium(11.10-11.11 ,2015), Chateraise Gateaux Kingdom Sapporo, Sapporo, Japan 11, 10 (Poster)

[51]T. Komatsuzaki
Single Molecule Biophysics: How can One Dig the Underlying Network from Noisy and Short Time Series?
International Conference on “Challenges in Data Science: a Complex Systems Perspective(10.14-10.17 ,2015), Torino, Italy 10, 14 ((invited)基調講演(keynote))

[50]Chun-Biu Li
The Key and Unlock Mechanisms in F1-ATPase Unveiled by Single Molecule Time Series Analysis
The 4th Workshop on Molecular & Chemical Kinetics(9.7-9.9 ,2015), Berlin, Germany (invited talk)

[49]Tamiki Komatsuzaki
Transition States from Gas Phase, Condensed Phase to Complex Networks
Telluride summer workshop “Geometry of Chemical Reaction Dynamics”(7.28-8.1 ,2015), Telluride Elementary School, Telluride, CO. 8, 1 (invited, oral)

[48]Hiroshi Teramoto, Mikito Toda, Masahiko Takahashi, Hirohiko Kohno, Tamiki Komatsuzaki
A Global Dynamical Switching of a Reaction Coordinate and its Experimental Observability
Telluride summer workshop “Geometry of Chemical Reaction Dynamics”(7.27-8.7 ,2015), Telluride Elementary School, Telluride, USA 8, 1 (invited talk)

[47]Chun-Biu Li
Searching for New Mathematical Frameworks to Understand Complex Systems in the Real World
Cross-border Forum of “Money problems, Job market, and Chaos: mathematical and economical perspective on distribution of value from a viewpoint of Italy’s and Japan’s Economy(7.29 ,2015), Hokkaido Univ., Sapporo, Japan 7, 29 (invited talk)

[46]Chu-Biu Li
Detection of Time Dependent Causality: An Information-theoretic Approach
Dynamical System Seminar(7.14 ,2015), Math. Department, Hokkaido Univ. 7, 14 (invited talk)

[45]T. Komatsuzaki
How can we define a transition state over a network?
R. Stephen Berry Tribune Symposium(6.23-6.26 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6, 26 (invited, oral)

[44]T. Komatsuzaki
A kinetic disconnectivity graph to decode timescale hierarchy buried in reaction networks
Chemistry & Dynamics in Complex Environments(6.23-6.26 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6, 23 (invited talk)

[43]Nick Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series
The Complexity of Dynamics Kinetics from Single Molecules to Cells(6.14-6.18 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6, 18 (Oral)

[42]Tamiki Komatsuzaki
Energy Landscapes learned from Single-Molecule Time-Series: Dimensionality and Disconnectivity Graph
The Complexity of Dynamics Kinetics from Single Molecules to Cells(6.14-6.18 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6, 15 (invited, oral)

[41]Chun-Biu Li
The Roles of ATP Hydrolysis Revealed by Single Molecule Time Series Analysis of Rotary Fluctuations in F1-ATPase
The Complexity of Dynamics Kinetics from Single Molecules to Cells(6.14-6.18 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6, 14 (invited,oral)

[40]Hiroshi Teramoto, Mikito Toda, Masahiko Takahashi, Hirohiko Kono, Tamiki Komatsuzaki
A Global Dynamical Switching of a Reaction Coordinate and its Experimental Observability
31st Symposium on Chemical Kinetics and Dynamics(6.3-6.5 ,2015), Frontier Research in Applied Sciences Bldg., Faculty of Engineering, Hokkaido University, Sapporo, Hokkaido 6, 3 (oral)

[39]Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki
Deciphering timescale hierarchy encoded in complex reaction networks
31st Symposium on Chemical Kinetics and Dynamics(6.3-6.5 ,2015), Frontier Research in Applied Sciences Bldg., Faculty of Engineering, Hokkaido University, Sapporo, Hokkaido 6, 3 (poster)

[38]Tamiki Komatsuzaki, Mikito Toda, Hiroshi Teramoto
Dynamical Switching of Reactive and Nonreactive Modes at High Energies
2015 SIAM Conference on Dynamical Systems(5.17-5.21 ,2015), Snowbird Ski and Summer Resort, Snowbird, Utah, USA 5, 20 (invited, oral)

[37]Tamiki Komatsuzaki
A Dynamical Switching of Reactive and Nonreactive Modes at High Energies epartment of Chemistry and Chemical Biology
Department Seminar in Department of Chemistry and Chemical Biology(5.15 ,2015), Cornell University, Ithaca, NY 14850 5, 15 (invited, oral)

[36]Tamiki Komatsuzaki
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
Department Seminar in Department of Chemistry(5.8 ,2015), Boston University, Boston, MA 02215 USA 5, 8 (invited, oral)

[35]Hiroshi Teramoto, Tamiki Komatsuzaki
Identifying different reaction processes in terms of graph laplacian
IlLuminyating 2015(5.7-5.8 ,2015), Instituto de Ciencias Matemáticas, Universidad Autónoma de Madrid, Madrid, Spain 5, 7 (invited, oral)

[34]Chun-Biu Li
Robust Construction of Dwell-Time Statistics from Experimental and Simulation Time Series
Department seminar(4.17 ,2015), Max Planck Institute of Colloids and Interfaces, Potsdam, Germany 4, 17 (invited talk)

[33]Chun-Biu Li
Time Series, Networks and Dynamics: Constructing Hidden Markov Model from Information Theory
Department seminar(4.14 ,2015), Department of Mathematics, Computer Science and Bioinformatics, Free University of Berlin, Germany 4, 14 (invited talk)

[32]Tamiki Komatsuzaki
Energy landscapes derived from single molecule spectroscopy and complex networks
IMS Symposium on “Architecture, dynamics, and functionality of molecular biosystems”(3.30-3.31 ,2015), Institute for Molecular Science (IMS), Okazaki, Japan 3, 31 (招待講演)

[31]Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Understandings of Chemical Reaction Dynamics in terms of Dynamical System Theory
Computational Chemistry (CC) Symposium in ICCMSE(3.20-3.23 ,2015), Metropolitan Hotel, Athens, Greece 3, 20 (invited, oral)

[30]Satoru Tsugawa
An Extraction Method of Alignment Structure from Raw Microscopy data
Workshop on dynamical systems and computation 2015‎(3.3-3.6 ,2015), Hokkaido University, Sapporo, Hokkaido 3, 3 (oral)

[29]Yutaka Nagahata, Hiroshi Teramoto, Takashi Horiyama, Chun-Biu Li, Tamiki Komatsuzaki
Timescale hierarchies of complex reaction network
Workshop on dynamical systems and computation 2015‎(3.3-3.6 ,2015), Hokkaido University, Sapporo, Hokkaido 3, 4 (oral)

[28]B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis
2015 Oil & Gas High Performance Computing Workshop(3.4-3.5 ,2015), BioScience Research Collaborative (BRC) Building, Rice University, Houston, USA 3, 5 (poster)

[27]Hiroshi Teramoto
Understandings of Chemical Reaction Dynamics in terms of Dynamical System Theory
Workshop on dynamical systems and computation 2015‎(3.3-3.6 ,2015), Hokkaido University, Sapporo, Hokkaido 3, 6 (oral)

[26]Tamiki Komatsuzaki
Hierarchical structure of no-return transition states
Spectroscopy and Dynamics of Molecules and Clusters 2015(2.19-2.22 ,2015), The Naini Retreat, Nainital, India 2, 21 (invited, oral)

[25]Tamiki Komatsuzaki
Chance and necessity in reactions under thermal fluctuation & chaos Department of Chemistry
Indian Institute of Technology Kanpur seminar(2.17 ,2015), Indian Institute of Technology Kanpur, Kanpur, India 2, 17 (invited, oral)

[24]Chun Biu Li
Single Molecule Time Series Analysis of F1-ATPase to Unravel the Role of ATP Hydrolysis and Thermal Fluctuations
Seminar at Max Planck Institute of Colloids and Interfaces(1.7 ,2015), Max Planck Institute of Colloids and Interfaces, Potsdam, Germany 1, 7 (invited, oral)

[23]Bo Shuang, David Cooper, J. Nick Taylor, Lydia Kisley, Jixin Chen, Wenxiao Wang, Chun Biu Li, Tamiki Komatsuzaki, Chrisy Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis
The 2015 Quantitative BioImaging Conference(1.7-1.9 ,2015), Institut Pasteur, Paris, France (poster)

[22]Tamiki Komatsuzaki
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series
The 8th biennial workshop on Single Molecule Biophysics (SMB)(1.4-1.9 ,2015), The Aspen Center for Physics, Aspen, USA 1, 4 (oral)

2016

[21]Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
The Non-equilibrium Effects on Reaction Kinetics of F1-ATPase
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12, 13 (Poster)

[20]J.N. Taylor, Chun-Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-Driven Approaches to Raman Microscopic Image Analysis
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12, 13 (Poster)

[19]Preetom Nag, Khalifa Mohammad Helal, Hiroshi Teramoto, Chun-Biu Li, Hisashi Haga, Tamiki Komatsuzaki
Dynamical Heterogeneity During Collective Migration of MDCK Epithelial Monolayer
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12, 13 (Poster)

[18]Khalifa Mohammad Helal, Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Hisashi Haga, Tamiki Komatsuzak
Collective Cell Migration: Underlying Dynamics and Emergent Structures of Heterogeneity
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12, 13 (Poster)

[17]Tamiki Komatsuzaki
Molecular Functions and Energy Landscapes Extracted from Single Molecule Time Series Data
HOKUDAI-NCTU Joint Symposium on Nano, Photo and Bio Sciences in 2016(10.4-10.5 ,2016), Lecture Hall, Frontier Research in Applied sciences Building, Hokkaido University, Sapporo, Hokkaido 10, 4 (invited, oral)

[16]Satoru Tsugawa
Plant Science from Viewpoint of Statistical Mechanics
Human Frontier Science Program 5th project conference(7.7-7.9 ,2016), Ibis Singapore on Bencoolen, Singapore 7, 7 (invited, oral)

[15] Tamiki Komatsuzaki
A kinetic disconnectivity graph to decode timescale hierarchy buried in reaction networks
Landscapes workshop 2016(6.27-7.3 ,2016), The Centre IGESA, Porquerolles, France 6, 28 (invited, oral)

[14]Tamiki Komatsuzaki
Single Molecule Biophysics: How can One extract the Underlying Markovian/non-Markovian Network from Noisy and Short Time Series?
IXXI-ENS Lyon seminar(6.17 ,2016), ENS de Lyon, Lyon, France 6, 17 (invited, oral)

[13]Tamiki Komatsuzaki
Phase Space geometry and Chemical Reaction Dynamics: Past, Present, and Future
Seminar of the ICB/Nanosciences department(6.21 ,2016), Laboratoire Interdisciplinaire Carnot de Bourgogne, Dijon, France 6, 21 (invited, oral)

[12] Tamiki Komatsuzaki
Defining Global Transition State over an Entire Markov Network
Seminar of the ICB/Nanosciences department(6.14 ,2016), Laboratoire Interdisciplinaire Carnot de Bourgogne, Dijon, France 6, 14 (invited, oral)

[11]Tamiki Komatsuzaki
Single Molecule Biophysics: How can One Dig the Underlying Network from Noisy and Short Time Series?
Seminar of the ICB/Nanosciences department(6.10 ,2016), Laboratoire Interdisciplinaire Carnot de Bourgogne, Dijon, France 6, 10 (invited, oral)

[10]Tamiki Komatsuzaki
Defining Global Transition State over an Entire Markov Network
Seminar at Beijing Computational Science Research Center(5.24-5.24 ,2016), Beijing Computational Science Research Center, Beijing, China 5, 24 (invited, oral)

[9]Chun-Biu Li
A Nano-Scale Key-and-Unlock Mechanism in the F1-ATPase revealed by Single Molecule Time Series Analysis
Seminar at Beijing Computational Science Research Center(5.20 ,2016), Beijing Computational Science Research Center, Beijing, China 5, 20 (invited, oral)

[8]Chun Biu Li
From single molecule time series to networks and dynamics: approaches from information theory
Conference on the Time in Biological Systems and Beyond(3.28-3.29 ,2016), National Tsing Hua University, Hsinchu, Taiwan 3, 29 (invited, oral)

[7] Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Classification of Electron Energy Level Crossings in terms of the Theory of Singularities and Analysis of Non-Adiabatic Transitions around the Crossings
Computational Chemistry (CC) Symposium in ICCMSE(3.17-3.20 ,2016), Metropolitan Hotel, Athens, Greece 3, 17 (invited, oral)

[6]J. Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images
The Biophysical Society 2016 BPS Annual Meeting(2.27-3.2 ,2016), Los Angeles Convention Center, Los Angeles, USA 2, 27 (oral)

[5]Chun Biu Li
Time Series, Networks and Dynamics: Constructing Hidden Markov Model from Information Theory
Department Seminar in Department of Chemistry, Computational Biophysical Chemistry(2.22 ,2016), Hong Kong University, Hong Kong, China 2, 22 (invited, oral)

2017

[4]Hiroshi Teramoto
Application of Singularity Theory to Material Sciences
Geometric and Algebraic Singularity Theory(9.11-9.15 ,2017), Będlewo Conference Center, Będlewo, Poland 9, 13 (oral)

[3]Tamiki Komatsuzaki
Energy'landscapes'learned'from'single'molecule'FRET'time'series:'Role'of'Photobleaching
Deciphering complex energy landscape and kinetic network from single molecules to cells: a new challenge to make theories meet experiments(9.3-9.8 ,2017), Hotel Mercure Dijon, Dijon, France 9, 7 (invited, oral)

[2]Sosuke Ito
Thermodynamics of information on biochemical signaling networks
Deciphering complex energy landscape and kinetic network from single molecules to cells: a new challenge to make theories meet experiments(9.3-9.8 ,2017), Hotel Mercure Dijon, Dijon, France 9, 6 (invited, oral)

[1]Hiroshi Teramoto
Classification of Hamiltonians in neighborhoods of band crossings in terms of the theory of singularities
the Floris Takens seminar series(9.5-9.5 ,2017), University of Groningen, Groningen, The Netherlands 9, 5 (invited, oral)