{"id":277,"date":"2014-01-29T00:49:59","date_gmt":"2014-01-28T15:49:59","guid":{"rendered":"http:\/\/mlns.es.hokudai.ac.jp\/?page_id=277"},"modified":"2024-08-30T10:28:39","modified_gmt":"2024-08-30T01:28:39","slug":"presentations_i_en","status":"publish","type":"page","link":"https:\/\/c-mng.cwh.hokudai.ac.jp\/mlns.es\/Root\/presentations_i_en.html","title":{"rendered":"Presentations"},"content":{"rendered":"

2024<\/a> |2023<\/a> |2022<\/a> |2021<\/a> |2020<\/a> |2019<\/a> |2018<\/a> |2017<\/a> |2016<\/a> |2015<\/a> |2014<\/a> |2013<\/a> | 2012<\/a> | 2011<\/a> | 2010<\/a> | 2009<\/a> | 2008<\/a> | 2007<\/a> | 2006<\/a> | 2005<\/a> | 2004<\/a> | 2003<\/a> | 2002<\/a> | 2001<\/a> | 2000<\/a><\/p>\n

2024<\/h3>
[388]<\/span><\/strong>Ryoya Kondo, Yuta Mizuno, J. Nicholas Taylor, Jean-Emmanuel Clement, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Raman histology with information theoretic assessments based on chemo-spatial information<\/strong><\/dt>
Biomedical Raman Imaging (BRI) Workshop 2024(11.25-11.27 ,2024), Osaka University, Suita 11<\/strong>, 26 (Poster) <\/dd>
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[387]<\/span><\/strong>Zannatul Ferdous, Jean Emmanuel Clement, Masumi Tsuda, Katsumasa Fujita, Yasuaki Kumamoto, Wang Lei, Menglu Li, Thomas Bocklitz, Jian Ping Gong, Shinya Tanaka, Tamiki Komatsuzaki
Raman Imaging Algorithm for Analysing Therapy-Resistant Cancer Cells<\/strong><\/dt>
28th International Conference on Raman Spectroscopy \u2013 ICORS 2024(7.28-8.2 ,2024), Sapienza University , Rome 8<\/strong>, 1 (Oral) <\/dd>
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[386]<\/span><\/strong>Tamiki Komatsuzaki
On-the-Fly Raman Microscopy Guaranteeing the Accuracy of Discrimination<\/strong><\/dt>
28th International Conference on Raman Spectroscopy \u2013 ICORS 2024(7.28-8.2 ,2024), Sapienza University , Rome 7<\/strong>, 29 (Invited, Oral) <\/dd>
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[385]<\/span><\/strong>Ryoya Kondo, Yuta Mizuno, Jean-Emmanuel Clement, Kentaro Mochizuki, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Quantification of Spatial and Spectral Information Dependent on Measurement Methods and Disease States in Raman Images<\/strong><\/dt>
IUPAB2024(6.24-6.28 ,2024), Kyoto International Conference Center, Kyoto 6<\/strong>, 27 (Poster) <\/dd>
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[384]<\/span><\/strong>Ryoya Kondo, Yuta Mizuno, Jean-Emmanuel Clement, Kentaro Mochizuki, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Extraction of dependent spatial or spectral features from different disease states in Raman images<\/strong><\/dt>
IUPAB2024(6.24-6.28 ,2024), Kyoto International Conference Center, Kyoto 6<\/strong>, 27 (Poster) <\/dd>
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[383]<\/span><\/strong>Zannatul Ferdous, Jean-Emmanuel Cl\u00e9ment, Jian Ping Gong, Shinya Tanaka, Masumi Tsuda, Tamiki Komatsuzaki
Morphological Difference in Hydrogel Induced Cancer Stem Cell in Synovial Sarcoma Model Cells<\/strong><\/dt>
IUPAB2024(6.24-6.28 ,2024), Kyoto International Conference Center, Kyoto 6<\/strong>, 27 (Poster) <\/dd>
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[382]<\/span><\/strong>Ryosuke Takami, Koji Tabata, Yayoi Wada, Masahiro Sonoshita, Tamiki Komatsuzaki
Development of an Efficient Estimation Method for Maximum Tolerated Dose by Reinforcement Learning<\/strong><\/dt>
IUPAB2024(6.24-6.28 ,2024), Kyoto International Conference Center, Kyoto 6<\/strong>, 27 (Poster) <\/dd>
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[381]<\/span><\/strong>M. Mohiuddin, Sulimon Sattari, Udoy S. Basak, Tamiki Komatsuzaki
Identifying direct and indirect interactions among collectively moving individuals using pairwise information flow metric<\/strong><\/dt>
IUPAB2024(6.24-6.28 ,2024), Kyoto International Conference Center, Kyoto 6<\/strong>, 25 (Poster) <\/dd>
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[380]<\/span><\/strong>Shunta Nonaga, Koji Tabata, Tamiki Komatsuzaki
Framework for efficient drug selection using machine learning<\/strong><\/dt>
IUPAB2024(6.24-6.28 ,2024), Kyoto International Conference Center, Kyoto 6<\/strong>, 25 (Poster) <\/dd>
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[379]<\/span><\/strong>Yuta Mizuno
Quantum Computing for Complex Chemical Systems Analysis<\/strong><\/dt>
The 8th Japan-Czech-Slovakia (JCS) International Symposium on Theoretical Chemistry(6.17-6.21 ,2024), Hokkaido University, Sapporo 6<\/strong>, 17 (Invited, Oral) <\/dd>
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[378]<\/span><\/strong>Shunichi Hashiba, Tomoyuki Kitano, Koji Tabata, Yoshihiro Matsumura, Kei Terayama, Tamiki Komatsuzaki
Bayesian Optimization for Efficient Exploration of Highly Enantioselective Reaction by Dynamic Feature Selection<\/strong><\/dt>
39th Symposium on Chemical Kinetics and Dynamics(6.12-6.14 ,2024), Shizuoka City Culture Hall, Shizuoka 6<\/strong>, 13 (Poster) <\/dd>
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[377]<\/span><\/strong>Tamiki Komatsuzaki
Reinforcement learning to accelerate Raman imaging and reaction discovery<\/strong><\/dt>
COMPLEXBIODYN 2024 (COMPLEX KINETICS AND DYNAMICS FROM SINGLE MOLECULE TO CELLS)(6.9-6.14 ,2024), Hotel Mercure Dijon, Dijon, France 6<\/strong>, 11 (Oral) <\/dd>
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[376]<\/span><\/strong>Ryoya Kondo
Quantification of mutual information between Raman images and HE stained images depend on disease states<\/strong><\/dt>
COMPLEXBIODYN 2024 (COMPLEX KINETICS AND DYNAMICS FROM SINGLE MOLECULE TO CELLS)(6.9-6.14 ,2024), Hotel Mercure Dijon, Dijon, France 6<\/strong>, 10 (Oral) <\/dd>
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[375]<\/span><\/strong>Jean-Emmanuel Clement
Accelerated spontaneous Raman measurement for biomedical applications<\/strong><\/dt>
COMPLEXBIODYN 2024 (COMPLEX KINETICS AND DYNAMICS FROM SINGLE MOLECULE TO CELLS)(6.9-6.14 ,2024), Hotel Mercure Dijon, Dijon, France 6<\/strong>, 10 (Oral) <\/dd>
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[374]<\/span><\/strong>Yuta Mizuno
Quantum Computing for Discrete Chemical Reaction Theory<\/strong><\/dt>
Hokudai\u2013NYCU Joint Workshop on Applied Mathematics (4.11-4.12 ,2024), National Yang Ming Chiao Tung University, Hsinchu, Taiwan 4<\/strong>, 11 (Invited, Oral) <\/dd>
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[373]<\/span><\/strong>Tamiki Komatsuzaki
On-the-fly Raman microscopy guaranteeing the accuracy of discrimination<\/strong><\/dt>
SPIE Photonics Europe(4.7-4.11 ,2024), Palais de la Musique et des Congr\u00e8s, Strasbourg, France 4<\/strong>, 8 (Invited, Oral) <\/dd>
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[372]<\/span><\/strong>Koji Tabata, Hiroyuki Kawagoe, Toshiki Kubo, James N. Taylor, Kentaro Mochizuki, Jean-Emmanuel Clement, Yasuaki Kumamoto, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita, Tamiki Komatsuzaki
Fast and accurate discrimination high-speed Raman imaging combined with multi-armed bandit algorithm in reinforcement learning<\/strong><\/dt>
Proc. SPIE 12853, High-Speed Biomedical Imaging and Spectroscopy IX(3.12-3.12 ,2024) 3<\/strong>, 12<\/dd>
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[371]<\/span><\/strong>Koji Tabata, Hiroyuki Kawagoe, Toshiki Kubo, James N. Taylor, Kentaro Mochizuki, Jean-Emmanuel Clement, Yasuaki Kumamoto, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita, Tamiki Komatsuzaki
Fast and accurate discrimination high-speed Raman imaging combined with multi-armed bandit algorithm in reinforcement learning<\/strong><\/dt>
SPIE Photonics West(1.27-2.1 ,2024), The Moscone Center, San Francisco, California, USA 1<\/strong>, 28 (Oral) <\/dd>
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[370]<\/span><\/strong>Ryoya Kondo, Yuta Mizuno, Jean-Emmanuel Clement, Kentaro Mochizuki, Katsumasa Fujita, Yoshinori Harada,, Tamiki Komatsuzaki
Development of information theoretic analysis to quantify information specific to Raman images<\/strong><\/dt>
SPIE Photonics West(1.27-2.1 ,2024), The Moscone Center, San Francisco, California, USA 1<\/strong>, 28 (Poster) <\/dd>
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[369]<\/span><\/strong>Toshiki Kubo, Koji Tabata, Hiroyuki Kawagoe, James Taylor, Jean-Emmanuel Clement, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita, Tamiki Komatsuzaki
On-the-fly slit-scanning confocal Raman microscope guaranteeing the accuracy of discrimination<\/strong><\/dt>
SPIE Photonics West(1.27-2.1 ,2024), The Moscone Center, San Francisco, California, USA 1<\/strong>, 27 (Invited, Oral) <\/dd>
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2023<\/h3>
[368]<\/span><\/strong>Shunta Nonaga, Koji Tabata, Tamiki Komatsuzaki
Risk - Avarse Bandits using Higher Order Moments<\/strong><\/dt>
The 2023 RIES\u2013CEFMS (Research Institute for Electronic Science\u2013Center for Emergent Functional Matter Science) Joint International Symposium (12.7-12.8 ,2023), Rusutsu Resort Hotel and Convention Center, Rusutsu, Hokkaido 12<\/strong>, 7 (Poster) <\/dd>
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[367]<\/span><\/strong>Mohammad Ali, Yuta Mizuno, Tamiki Komatsuzaki
Accelerating Atom Mapping with an Ising Machine<\/strong><\/dt>
The 2023 RIES\u2013CEFMS (Research Institute for Electronic Science\u2013Center for Emergent Functional Matter Science) Joint International Symposium (12.7-12.8 ,2023), Rusutsu Resort Hotel and Convention Center, Rusutsu, Hokkaido 12<\/strong>, 7 (Poster) <\/dd>
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[366]<\/span><\/strong>M. Mohiuddin, Sulimon Sattari, Udoy Basak, Tamiki Komatsuzaki
Inferring Direct and Indirect Interactions among Agents in Collective Motion using Pairwise Information Flow Measure Transfer Entropy<\/strong><\/dt>
The 2023 RIES\u2013CEFMS (Research Institute for Electronic Science\u2013Center for Emergent Functional Matter Science) Joint International Symposium (12.7-12.8 ,2023), Rusutsu Resort Hotel and Convention Center, Rusutsu, Hokkaido 12<\/strong>, 7 (Poster) <\/dd>
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[365]<\/span><\/strong>Md. Menhazul Abedin, Koji Tabata, Yoshihiro Matsumura, Tamiki Komatsuzaki
Sequentially Molecular Properties Prediction using Linear Bandit Algorithm<\/strong><\/dt>
The 2023 RIES\u2013CEFMS (Research Institute for Electronic Science\u2013Center for Emergent Functional Matter Science) Joint International Symposium (12.7-12.8 ,2023), Rusutsu Resort Hotel and Convention Center, Rusutsu, Hokkaido 12<\/strong>, 7 (Poster) <\/dd>
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[364]<\/span><\/strong>Ryoya Kondo, J. Nicholas Taylor, Yuta Mizuno, Jean-Emmanuel Clement, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Use of Spatial Chemical Heterogeneity for Raman Histology: An Information Theoretical Analysis<\/strong><\/dt>
The 24th RIES-HOKUDAI International Symposium(12.6-12.7 ,2023), Akira Suzuki Hall, Sapporo 12<\/strong>, 6 (Poster) <\/dd>
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[363]<\/span><\/strong>Ryoichi Tanaka, Yuta Mizuno, Takuro Tsutsumi, Mikito Toda, Tetsuya Taketsugu, Tamiki Komatsuzaki
Visualization of Chemical Reaction Phase Space Using Supervised Dimensional Reduction Method<\/strong><\/dt>
The 24th RIES-HOKUDAI International Symposium(12.6-12.7 ,2023), Akira Suzuki Hall, Sapporo 12<\/strong>, 6 (Poster) <\/dd>
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[362]<\/span><\/strong>Mohammad Ali, Yuta Mizuno, Seiji Akiyama, Yuuya Nagata, Tamiki Komatsuzaki
Accelerating Atom Mapping with Ising Machines<\/strong><\/dt>
The 24th RIES-HOKUDAI International Symposium(12.6-12.7 ,2023), Akira Suzuki Hall, Sapporo 12<\/strong>, 6 (Poster) <\/dd>
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[361]<\/span><\/strong>M. Mohiuddin, Sulimon Sattari, Udoy S. Basak, Tamiki Komatsuzaki
Detecting direct and indirect associations in collectively moving agents by employing a pairwise information flow metric<\/strong><\/dt>
The 24th RIES-HOKUDAI International Symposium(12.6-12.7 ,2023), Akira Suzuki Hall, Sapporo 12<\/strong>, 6 (Poster) <\/dd>
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[360]<\/span><\/strong>Jean-Emmanuel Cl\u00e9ment, Zannatul Ferdous, Masumi Tsuda, Shinya Tanaka, Jian Ping Gong, Thomas Bocklitz, Fujita Katsumasa, Tamiki Komatsuzaki
Advancing the Detection of Cancer Stem Cells Using Line Illumination Raman Microscopy and Hydrogel Substrates<\/strong><\/dt>
The 24th RIES-HOKUDAI International Symposium(12.6-12.7 ,2023), Akira Suzuki Hall, Sapporo 12<\/strong>, 6 (Poster) <\/dd>
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[359]<\/span><\/strong>Koji Tabata
Advancements and Applications of Pure Exploration in Bandit Feedback<\/strong><\/dt>
The 15th Asian Conference on Machine Learning(11.11-11.14 ,2023), Ac\u0131badem University Conference Center, Istanbul, Turkey 11<\/strong>, 11 (Invited, Oral) <\/dd>
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[358]<\/span><\/strong>Tamiki Komatsuzaki
On-the-fly Raman microscopy guaranteeing the accuracy of discrimination<\/strong><\/dt>
RamanFest 2023(11.9-11.10 ,2023), Hotel Pullman Paris La D\u00e9fense, Paris, France 11<\/strong>, 9 (Invited, Oral) <\/dd>
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[357]<\/span><\/strong>Jean-Emmanuel Cl\u00e9ment, Zannatul Ferdous, Masumi Tsuda, Shinya Tanaka, Jian Ping Gong, Thomas Bocklitz, Katsumasa Fujita, Tamiki Komatsuzaki
Standardizing Raman Line Illumination Microscopy Data to Investigate Hydrogel-Mediated Reprogramming of Cancer Stem Cells<\/strong><\/dt>
FACSS SciX 2023(10.8-10.13 ,2023), Nugget Casino Resort, Sparks, Nevada, USA 10<\/strong>, 9 (Invited, Oral) <\/dd>
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[356]<\/span><\/strong>Yutaka Nagahata, David J. Wales, Tamiki Komatsuzaki
Challenges for finding bottleneck of energy landscape<\/strong><\/dt>
The 5th conference of Theory and Applications of Computational Chemistry (TACC)(9.4-9.9 ,2023), Hokkaido University, Sapporo 9<\/strong>, 5 (Poster) <\/dd>
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[355]<\/span><\/strong>Ryoichi Tanaka, Yuta Mizuno, Takuro Tsutsumi\t, Mikito Toda, Tetsuya Taketsugu, Tamiki Komatsuzaki\t
An Analysis of Chemical Reaction Dynamics in DImensionally Reduced Phase Space<\/strong><\/dt>
The 5th conference of Theory and Applications of Computational Chemistry (TACC)(9.4-9.9 ,2023), Hokkaido University, Sapporo 9<\/strong>, 7 (Poster) <\/dd>
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[354]<\/span><\/strong>Tamiki Komatsuzaki
A Structure of Timescale Hierarchy in Reaction Network<\/strong><\/dt>
The 5th conference of Theory and Applications of Computational Chemistry (TACC)(9.4-9.9 ,2023), Hokkaido University, Sapporo 9<\/strong>, 7 (Invited, Oral) <\/dd>
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<\/p>\n\n

[353]<\/span><\/strong>Jean-Emmanuel Cl\u00e9ment, Zannatul Ferdous, Thomas Bocklitz, Katsumasa Fujita, Jian Ping Gong, Shinya Tanaka, Tamiki Komatsuzaki
Advancing cancer stem cell detection through line illumination Raman microscope and hydrogel substrate<\/strong><\/dt>
International Conference on Advanced Vibrational Spectroscopy (ICAVS12)(8.27-9.1 ,2023), Jagiellonian University, Krakow, Poland 8<\/strong>, 29 (Invited, Oral) <\/dd>
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<\/p>\n\n

[352]<\/span><\/strong>Jean-Emmanuel Cl\u00e9ment, Zannatul Ferdous, Masumi Tsuda, Shinya Tanaka, Jian Ping Gong, Thomas Bocklitz, Katsumasa Fujita, Tamiki Komatsuzaki
Advancing the Detection of Cancer Stem Cells Using Line Illumination Raman Microscopy and Hydrogel Substrates<\/strong><\/dt>
International Conference on Biological Physics(8.14-8.18 ,2023), Seoul Olympic Parktel, Seoul, Korea 8<\/strong>, 14 (Oral) <\/dd>
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<\/p>\n\n

[351]<\/span><\/strong>Tamiki Komatsuzaki
Reinforcement Learning Strategy to accelerate measurements and reaction discovery<\/strong><\/dt>
International WorkShop on Applied Mathematics(7.11-7.12 ,2023), Hokkaido University, Research Institute for Electronic Science, Sapporo 7<\/strong>, 11 (Invited, Oral) <\/dd>
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<\/p>\n\n

[350]<\/span><\/strong>Tamiki Komatsuzaki
On-the-fly Raman microscopy guaranteeing the accuracy of diagnosis by reinforcement learning<\/strong><\/dt>
Biomedical Raman Imaging 2023(6.25-6.27 ,2023), Emory University, Atlanta, Georgia, USA 6<\/strong>, 26 (Invited, Oral) <\/dd>
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<\/p>\n\n

[349]<\/span><\/strong>Ryoya Kondo, James Nicholas Taylor, Yuta Mizuno, Jean-Emmanuel Clement, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki\t
Raman Histology: Information Theoretical Evaluation of Disease State Based on Chemical-Spatial Information<\/strong><\/dt>
Biomedical Raman Imaging 2023(6.25-6.27 ,2023), Emory University, Atlanta, Georgia, USA 6<\/strong>, 25-26 (Poster) <\/dd>
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<\/p>\n\n

[348]<\/span><\/strong>Yuta Mizuno, Tamiki Komatsuzaki
Enumerating all optimal solutions in combinatorial optimization using Ising machines<\/strong><\/dt>
Adiabatic Quantum Computing Conference 2023 (AQC 2023)(6.19-6.23 ,2023), Albuquerque, New Mexico, USA 6<\/strong>, 22 (Poster) <\/dd>
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<\/p>\n\n

[347]<\/span><\/strong>Yuta Mizuno, Yosuke Sumiya, Yusuke Himeoka
Simulating fast and slow chemical kinetics with dynamic mode decomposition<\/strong><\/dt>
38th Symposium on Chemical Kinetics and Dynamics(6.7-6.9 ,2023), \u4e5d\u5dde\u5927\u5b66 \u897f\u65b0\u30d7\u30e9\u30b6, Fukuoka 6<\/strong>, 8 (Oral) <\/dd>
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<\/p>\n\n

[346]<\/span><\/strong>Shunichi Hashiba, Koji Tabata, Yoshihiro Matsumura, Kei Terayama, Tamiki Komatsuzaki
Efficient Exploration of Highly Enantioselective Reactions by Bayesian Optimization<\/strong><\/dt>
38th Symposium on Chemical Kinetics and Dynamics(6.7-6.9 ,2023), \u4e5d\u5dde\u5927\u5b66 \u897f\u65b0\u30d7\u30e9\u30b6, Fukuoka 6<\/strong>, 7 (Poster) <\/dd>
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<\/p>\n\n

[345]<\/span><\/strong>Ryoichi Tanaka, Yuta Mizuno, Takuro Tsutsumi, Mikito Toda, Tetsuya Taketsugu, Tamiki Komatsuzaki
A Phase Space Structure Analysis of Chemical Reaction Dynamics Using Supervised Dimensionality Reduction<\/strong><\/dt>
Energy Landscapes: Theory and Applications 2023(6.5-6.9 ,2023), Centre IGESA, Porquerolles, France 6<\/strong>, 5 (Oral) <\/dd>
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<\/p>\n\n

[344]<\/span><\/strong>Tamiki Komatsuzaki
A Structure of Kinetic Hierarchy in Reaction Network<\/strong><\/dt>
Energy Landscapes: Theory and Applications 2023(6.5-6.9 ,2023), Centre IGESA, Porquerolles, France 6<\/strong>, 5 (Invited, Oral) <\/dd>
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<\/p>\n\n

[343]<\/span><\/strong>Koji Tabata, Junpei Komiyama, Atsuyoshi Nakamura, Tamiki Komatsuzaki
Posterior Tracking Algorithm for Classification Bandits<\/strong><\/dt>
The 26th International Conference on Artificial Intelligence and Statistics (AISTATS) (4.25-4.27 ,2023), Palau de Congressos, Valencia, Spain 4<\/strong>, 27 (Poster) <\/dd>
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<\/p>\n\n

[342]<\/span><\/strong>Tamiki Komatsuzaki
On-the-fly Raman microscopy guaranteeing the accuracy of diagnosis by reinforcement learning<\/strong><\/dt>
SPIE Photonics West(1.28-2.2 ,2023), The Moscone Center, San Francisco, USA 1<\/strong>, 28 (Invited, Oral) <\/dd>
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<\/p>\n\n

[341]<\/span><\/strong>Mohammad Ali, Yuta Mizuno, Tamiki Komatsuzaki
Automatic parameter tuning of Ising machines: An application to reaction pathway analysis<\/strong><\/dt>
5th ICReDD International Symposium(1.10-1.10 ,2023), Online 1<\/strong>, 10 (Poster) <\/dd>
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<\/p>\n\n

[340]<\/span><\/strong>Mikhail Tsitsvero, Jenny Pirillo, Yuh Hijikata, Tamiki Komatsuzaki
NMR spectrum prediction for dynamic molecules by machine learning: case study of trefoil knot molecule<\/strong><\/dt>
5th ICReDD International Symposium(1.10-1.10 ,2023), Online 1<\/strong>, 10 (Poster) <\/dd>
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<\/p>\n\n

[339]<\/span><\/strong>Md. Menhazul Abedin, Koji Tabata, Yoshihiro Matsumura, Tamiki Komatsuzaki
Linear Bandit Algorithm for the Sequential Experiments of Molecular Properties<\/strong><\/dt>
5th ICReDD International Symposium(1.10-1.10 ,2023), Online 1<\/strong>, 10 (Poster) <\/dd>
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<\/p>\n\n

[338]<\/span><\/strong>Zannatul Ferdous, Jean-Emmanuel Cl\u00e9ment, Jian Ping Gong, Shinya Tanaka, Tamiki Komatsuzaki, Masami Tsuda
Geometrical Analysis of Hydrogel Induced Cancer Stem Cells in Synovial Sarcoma Model Cells<\/strong><\/dt>
5th ICReDD International Symposium(1.10-1.10 ,2023), Online 1<\/strong>, 10 (Poster) <\/dd>
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<\/p>\n\n

2022<\/h3>
[337]<\/span><\/strong>Jean-Emmanuel Clement, Zannatul Ferdous, Koji Tabata, Shinya Tanaka, Jian Ping Gong, Katsumasa Fujita, Tamiki Komatsuzaki
Establishment of a novel platform of Raman microscope for diagnosis of hydrogel-generated cancer stem cells<\/strong><\/dt>
WPI joint symposium for interdisciplinary life sciences, The 45th Annual Meeting of the Molecular Biology Society of Japan(11.30-12.2 ,2022), Makuhari Messe, Chiba 12<\/strong>, 2 (Oral) <\/dd>
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<\/p>\n\n

[336]<\/span><\/strong>Tamiki Komatsuzaki
Acceleration of Single Cell Raman Imaging to Guarantee the Accuracy of Diagnosis by Reinforcement Learning<\/strong><\/dt>
Data Modeling and Computation: Capturing Biomolecular Processes(10.31-11.4 ,2022), CECAM-HQ-EPFL, Lausanne, Switzerland 10<\/strong>, 31 (Invited, Oral) <\/dd>
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<\/p>\n\n

[335]<\/span><\/strong>Tamiki Komatsuzaki\t
On-the-fly Raman microscopy with Guaranteeing Accuracy using Reinforcement Learning I: Theory<\/strong><\/dt>
FACSS SciX 2022(10.2-10.7 ,2022), Northern Kentucky Convention Center, Cincinnati, Kentucky, USA 10<\/strong>, 4 (Invited, Oral) <\/dd>
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<\/p>\n\n

[334]<\/span><\/strong>Tamiki Komatsuzaki
Single Molecule Biophysics: What do Single Molecules Experience its Energy Landscape?<\/strong><\/dt>
Computational Biophysics of Atomic Force Microscopy(9.19-9.21 ,2022), Kanazawa University, Kanazawa, Japan 9<\/strong>, 20 (Invited, Oral) <\/dd>
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<\/p>\n\n

[333]<\/span><\/strong>Jean-Emmanuel Clement, Zannatul Ferdous, James Nicholas Taylor, Koji Tabata, Yoshinori Harada, Masami Tsuda, Shinya Tanaka, Jian Ping Gong, Katsumasa Fujita, Tamiki Komatsuzaki
Gaussian Weighted Background Correction for Raman images<\/strong><\/dt>
19th European Conference on the Spectroscopy of Biological Molecules(8.29-9.1 ,2022), University of Reims Champagne-Ardenne, Reims, France 8<\/strong>, 31 (Oral) <\/dd>
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<\/p>\n\n

[332]<\/span><\/strong>Yuta Mizuno, Mikoto Takigawa, Saki Miyashita, Yutaka Nagahata, Hiroshi Teramoto, Tamiki Komatsuzaki
An algorithm for computing phase space structures in chemical reaction dynamics using Voronoi tessellation<\/strong><\/dt>
37th Symposium on Chemical Kinetics and Dynamics(6.1-6.3 ,2022), Online, Sendai, Japan 6<\/strong>, 3 (Oral) <\/dd>
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<\/p>\n\n

[331]<\/span><\/strong>Ryoichi Tanaka, Yuta Mizuno, Takuro Tsutsumi, Mikhail Tsitsvero, Mikito Toda, Tetsuya Taketsugu, Tamiki Komatsuzaki
A Theoretical Study of Organic Reaction Dynamics in a Low Dimensional Space Reduced by Principal Component Analysis<\/strong><\/dt>
37th Symposium on Chemical Kinetics and Dynamics(6.1-6.3 ,2022), Online, Sendai, Japan 6<\/strong>, 1 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[330]<\/span><\/strong>Tamiki Komatsuzaki, Koji Tabata, Hiroyuki Kawagoe, James Nicholas Taylor, Kentaro Mochizuki, Toshiki Kubo, Jean-Emmanuel Clement, Yasuaki Kumamoto, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita
On-the-fly Raman image microscopy by reinforcement machine learning<\/strong><\/dt>
SPIE Photonics Europe 2022(4.3-4.7 ,2022), Palais de la Musique et des Congr\u00e8s, Strasbourg, France 4<\/strong>, 5 (Invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[329]<\/span><\/strong>Tamiki Komatsuzaki
Acceleration of Designing Chemical Reactions by Contextual Multi-armed Bandit Algorithm<\/strong><\/dt>
ICReDD\/Hokkaido University Five Attached Institutes Joint Symposium(3.7-3.7 ,2022), Online, Sapporo, Japan 3.7<\/strong>, 3.7 (Invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

2021<\/h3>
[328]<\/span><\/strong>Yuta Mizuno
Chemical Reaction Pathway Analysis by Ising Computing<\/strong><\/dt>
2021 RIES-CEFMS on-line symposium (12.21-12.22 ,2021), Center for Emergent Functional Matter Science, National Yang Ming Chiao Tung University 12<\/strong>, 22 (Invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[327]<\/span><\/strong>Zannatul Ferdous, Jean-Emmanuel Clement, James Nicholas Taylor, Koji Tabata, Yoshinori Harada, Masami Tsuda, Shinya Tanaka, Jian Ping Gong, Katsumasa Fujita, Tamiki Komatsuzaki
Gaussian Weighted Background Correction Scheme for Hyperspectral Raman Data Preprocessing<\/strong><\/dt>
The 22nd RIES-HOKUDAI International Symposium(12.6-12.7 ,2021), Online 12<\/strong>, 6 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[326]<\/span><\/strong>Tamiki Komatsuzaki\t, Koji Tabata, Hiroyuki Kawagoe, James Nicholas Taylor\t, Kentaro Mochizuki\t, Jean-Emmanuel Clement\t\t, Yasuaki Kumamoto\t, Atsuyoshi Nakamura\t, Yoshinori Harada\t, Katsumasa Fujita\t
On-the-fly Raman image microscopy by reinforcement machine learning<\/strong><\/dt>
FACSS SciX 2021(9.26-10.1 ,2021), Rhode Island Convention Center, Providence, RI, USA 9<\/strong>, 30 (Invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[325]<\/span><\/strong>Koji Tabata, Atsuyoshi Nakamura, Tamiki Komatsuzaki
Classification Bandits: Classification Using Expected Rewards as Imperfect Discriminators<\/strong><\/dt>
PAKDD2021 Workshop on Machine Learning for MEasurement Informatics(5.11-5.11 ,2021), Online, Osaka 5<\/strong>, 11 (Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[324]<\/span><\/strong>NAGAHATA Yutaka, TAKETSUGU Tetsuya, MAEDA Satoshi,, KOMATSUZAKI Tamiki
The hierarchy of observable reaction networks associated with observation time-intervals<\/strong><\/dt>
ICReDD 3rd International Symposium(2.22-2.24 ,2021), Online, Sapporo, Japan 2<\/strong>, 22 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[323]<\/span><\/strong>Zannatul Ferdous, Masumi Tsuda, Jean-Emmanuel Cl\u00e9ment, Koji Tabata, Jian Ping Gong, Shinya Tanaka, Tamiki Komatsuzaki
Detection of Cancer Stem Cells in Sarcoma Model Cells Using Morphological Features for Developing New Diagnostics Tools<\/strong><\/dt>
ICReDD 3rd International Symposium(2.22-2.24 ,2021), Online, Sapporo, Japan 2<\/strong>, 22 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

2020<\/h3>
[322]<\/span><\/strong>Sulimon Sattari, Udoy Basak, Motaleb Md. Hossain, Kazuki Horikawa, Tamiki Komatsuzaki
Vector analysis of amoeba motion with respect to the propagation of chemoattractant cyclic-AMP<\/strong><\/dt>
The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[321]<\/span><\/strong>Md. Motaleb Hossain, Sulimon Sattari, Udoy Sankar Basak, Kazuki Horikawa, Tamiki Komatsuzaki
Vector analysis of amoeba motion response to a cyclic-AMP wave<\/strong><\/dt>
The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[320]<\/span><\/strong>Jean-Emmanuel Cl\u00e9ment, Mochizuki Kentaro, Katsumasa Fujita, Tamiki Komatsuzaki
Raman Imaging for Exploring Cancer Metabolism<\/strong><\/dt>
The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[319]<\/span><\/strong>Zannatul Ferdous, Masumi Tsuda, Jean-Emmanuel Cl\u00e9ment, Koji Tabata, Yusuke Ishida, Jun Suzuka, Jian Ping Gong, Shinya Tanaka, Tamiki Komatsuzaki
Analysis of Cancer Stem Cells in Sarcoma Model Cells by Deep Neural Network<\/strong><\/dt>
The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[318]<\/span><\/strong>Udoy S. Basak, Sulimon Sattari, Motaleb M. Hossain, Kazuki Horikawa, Tamiki Komatsuzaki
Inferring domain of Interaction among Dictyostelium discoideum colony from the ensemble of Trajectories of cells<\/strong><\/dt>
The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[317]<\/span><\/strong>Md. Menhazul Abedin, Koji Tabata, Jean-Emmanuel Cl\u00e9ment, Masumi Tsuda, Shinya Tanaka, Tamiki Komatsuzaki
Application of Linear Bandit in Drug Screening Example<\/strong><\/dt>
The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[316]<\/span><\/strong>Abdul Halim Bhuiyan, Jean-emmanuel Cl\u00e9ment, Kentaro Mochizuki, James Nick Taylor, Koji Tabata, Yuta Mizuno, Atsuyoshi Nakamura, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
To classify Raman spectra using Deep Learning Approach<\/strong><\/dt>
The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[315]<\/span><\/strong>Ryoya Kondo, James N Taylor, Jean-emmanuel Cl\u00e9ment, Yuta Mizuno, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Classification of Spectra in Raman Microscopic Image by Chemical Heterogeneity<\/strong><\/dt>
The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[314]<\/span><\/strong>Tamiki Komatsuzaki
Geometrical aspect of chemical reaction dynamics in thermally fluctuating environments and Future Directions<\/strong><\/dt>
Chaos Indicators, Phase Space and Chemical Reaction Dynamics(5.4-5.6 ,2020), University of Bristol, UK (held online) 5<\/strong>, 4 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

2019<\/h3>
[313]<\/span><\/strong>Udoy. S Basak, Sulimon Sattari, Tamiki Komatsuzaki
An Information-theoretic approach to identify the interaction radius of a group of collectively moving animals<\/strong><\/dt>
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12<\/strong>, 2 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[312]<\/span><\/strong>Hiroshi Teramoto, Yutaro Kabata, Kenta Hayano, Naoki Hamada
Type of singularity that can appear in Pareto set<\/strong><\/dt>
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12<\/strong>, 2 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[311]<\/span><\/strong>Sulimon Sattari, Udoy Basak, Sky Nicholson, Jason Green, Mikito Toda, Tamiki Komatsuzaki
A sandbox model system for analyzing leadership in collective motion<\/strong><\/dt>
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12<\/strong>, 2 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[310]<\/span><\/strong>Koji Tabata, Atsuyoshi Nakamura, Tamiki Komatsuzaki
Bad Arm Existence Checking Algorithm with Bandit Feeedback<\/strong><\/dt>
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12<\/strong>, 2 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[309]<\/span><\/strong>Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Microscopic Histology using Ensemble Learning for Non-alcoholic Fatty Liver Disease<\/strong><\/dt>
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12<\/strong>, 2 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[308]<\/span><\/strong>J. Nicholas Taylor, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
High Resolution Raman Microscopic Detection of Follicular Thyroid Cancer Cells with Unsupervised Machine Learning<\/strong><\/dt>
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12<\/strong>, 2 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[307]<\/span><\/strong>Jean-Emmanuel Clement, Shunsuke Ono, Kentaro Mochizuki, Katsumasa Fujita, Tamiki Komatsuzaki
Raman Imaging for Exploring Cancer Metabolism<\/strong><\/dt>
The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12<\/strong>, 2 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[306]<\/span><\/strong>Tamiki Komatsuzaki
On-the-fly Raman image microscopy by reinforcement machine learning<\/strong><\/dt>
Biomedical Raman Imaging 2019(11.24-11.26 ,2019), Icho Kaikan, Suita Campus, Osaka University, Osaka, Japan 11<\/strong>, 26 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[305]<\/span><\/strong>Jean-Emmanuel Clement, Shunsuke Ono, Kentaro Mochizuki, Katsumasa Fujita, Tamiki Komatsuzaki
Accelerated Raman hyperspectral imaging for cancer diagnosis<\/strong><\/dt>
Biomedical Raman Imaging 2019(11.24-11.26 ,2019), Icho Kaikan, Suita Campus, Osaka University, Osaka, Japan 11<\/strong>, 25 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[304]<\/span><\/strong>Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Hyperspectral Image Analysis Using Ensemble Learning for Non-alcoholic Fatty Liver Disease<\/strong><\/dt>
Biomedical Raman Imaging 2019(11.24-11.26 ,2019), Icho Kaikan, Suita Campus, Osaka University, Osaka, Japan 11<\/strong>, 25 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[303]<\/span><\/strong>Tamiki Komatsuzaki
Causal inference in Leader-follower relationship<\/strong><\/dt>
ICSB 2019: Singularity Biology: small elements change the function of the whole systems(10.31 ,2019), Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 10<\/strong>, 31 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[302]<\/span><\/strong>Hiroshi Teramoto
Classification of band crossing geometries, their invariants and bifurcations<\/strong><\/dt>
6th International Workshop on Singularities in Generic Geometry and its Applications(10.21-10.25 ,2019), Campus de Burjassot of the Universitat de Val\u00e8ncia, Val\u00e8ncia 10<\/strong>, 21 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[301]<\/span><\/strong>Hiroshi Teramoto
Automation algorithms of classification of singularities, current status and future perspectives<\/strong><\/dt>
Singularity Theory and its Applications in Differential Equations and Differential Geometry(9.8-9.14 ,2019), Lomonosov Moscow State University, Department of Mechanics and Mathematics, Moscow 9<\/strong>, 13 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[300]<\/span><\/strong>Hiroshi Teramoto
Classi\ufb01cation, bifurcation and invariants of band crossings in terms of singularity theory<\/strong><\/dt>
Progress in the Mathematics of Topological States of Matter(7.29-8.2 ,2019), AIMR, Tohoku University, Sendai, Japan 8<\/strong>, 2 (\u62db\u5f85, \u53e3\u982d) <\/dd>
<\/div><\/div>

<\/p>\n\n

[299]<\/span><\/strong>Yuta Mizuno
A diagrammatic approach to understanding complicated nonadiabatic chemical reaction dynamics<\/strong><\/dt>
XV INTERNATIONAL WORKSHOP ON QUANTUM REACTIVE SCATTERING (QRS2019 workshop)(7.1-7.5 ,2019), Saitama University, Saitama, Japan 7<\/strong>, 3 (\u53e3\u982d) <\/dd>
<\/div><\/div>

<\/p>\n\n

[298]<\/span><\/strong>Jean-Emmanuel Clement
Reflection about Surface Enhanced Raman Spectroscopy<\/strong><\/dt>
The Complexity of Dynamics and Kinetics from Single Molecules to Cells(6.15-6.20 ,2019), Telluride Intermediate School, Telluride, CO. USA 6<\/strong>, 19 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[297]<\/span><\/strong>Tamiki Komatsuzaki
Raman pathology and its phenotypic landscape for Non-alcoholic fatty liver diseases<\/strong><\/dt>
The Complexity of Dynamics and Kinetics from Single Molecules to Cells(6.15-6.20 ,2019), Telluride Intermediate School, Telluride, CO. USA 6<\/strong>, 17 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[296]<\/span><\/strong>Tamiki Komatsuzaki
Deciphering hierarchical features in reaction network and energy landscape<\/strong><\/dt>
Network analysis to elucidate natural system dynamics, diversity and performance(5.2-5.4 ,2019), CECAM-FR-RA, Lyon, France 5<\/strong>, 4 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[295]<\/span><\/strong>Aurelien Pelissier, Atsuyoshi Nakamura, Koji Tabata
Feature Selection As Monte-Carlo Search in Growing Single Rooted Directed Acyclic Graph by Best Leaf Identification<\/strong><\/dt>
2019 SIAM International Conference on Data Mining(5.2-5.4 ,2019), Hyatt Regency Calgary, Canada, Calgary 5<\/strong>, 3 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[294]<\/span><\/strong>Hiroshi Teramoto
A Fully Automated Algorithm for Classification in Singularity Theory<\/strong><\/dt>
AMS Spring Central and Western Joint Sectional Meeting(3.22-3.24 ,2019), University of Hawaii at Manoa, Honolulu, HI. USA 3<\/strong>, 22 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

2018<\/h3>
[293]<\/span><\/strong>Hiroshi Teramoto, Asahi Tsuchida, Yutaro Kabata, Kenji Kondo, Katsusuke Nabeshima, Shy\u016bichi Izumiya, Mikito Toda, Tamiki Komatsuzaki
Application of Singularity Theory to Material Science<\/strong><\/dt>
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12<\/strong>, 11 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[292]<\/span><\/strong>J. Nicholas Taylor, Kentaro Mochizuki, Katsumasa Fujita, Tamiki Komatsuzaki
Data-Driven Analysis of Raman Microscopic Images of Human Follicular Thyroid Cells<\/strong><\/dt>
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12<\/strong>, 11 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[291]<\/span><\/strong>Mikoto Takigawa, Sulimon Sattari, Sosuke Ito, Hiroshi Teramoto, Tamiki Komatsuzaki
The origin of why and how reactions take place: Reaction cylinders by Voronoi tessellation<\/strong><\/dt>
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12<\/strong>, 11 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[290]<\/span><\/strong>Koji Tabata, Atsuyoshi Nakamura, Tamiki Komatsuzaki
Bad Arm Existence Checking Algorithms with Bandit Feedback<\/strong><\/dt>
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12<\/strong>, 11 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[289]<\/span><\/strong>Sulimon Sattari, Udoy Basak, Sky Nicholson, Jason Green, Mikito Toda, Tamiki Komatsuzaki
A sandbox model system for analyzing leadership in collective motion<\/strong><\/dt>
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12<\/strong>, 11 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[288]<\/span><\/strong>Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Information-theoretical Approaches to Raman Microscopic Images to Predict Non-alcoholic Fatty Liver Disease<\/strong><\/dt>
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12<\/strong>, 11 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[287]<\/span><\/strong>Udoy S. Basak, Sulimon Sattari, Sosuke Ito, Kazuki Horikawa, Tamiki Komatsuzaki
Information theoretic approach to identify the leader(s) in Dictyostelium Discoideum colony<\/strong><\/dt>
The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12<\/strong>, 11 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[286]<\/span><\/strong>Sosuke Ito
Stochastic thermodynamics and information geometry<\/strong><\/dt>
Advances in Physics of Emergent orders in Fluctuations 2018(11.12-11.15 ,2018), Ito International Research Center, Tokyo, Japan 11<\/strong>, 14 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[285]<\/span><\/strong>Hiroshi Teramoto
Application of Singularity Theory to Material Science<\/strong><\/dt>
The 6th International Symposium on AMBITIOUS LEADER\u2019S PROGRAM Fostering Future Leaders to Open New Frontiers in Materials Science(10.30 ,2018), Akira Suzuki Hall, Hokkaido University, Sapporo, Hokkaido 10<\/strong>, 30 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[284]<\/span><\/strong>Hiroshi Teramoto
Normal Forms in Singularity Theory for Geometric Classifications of Band Structures<\/strong><\/dt>
Dynamics Days Europe 2018(9.3-9.7 ,2018), Loughborough University, Loughborough, UK 9<\/strong>, 3 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[283]<\/span><\/strong>Tamiki Komatsuzaki
Phase Space geometry and Chemical Reaction Dynamics in Driven Systems<\/strong><\/dt>
Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases(7.17-7.27 ,2018), Telluride Intermediate School, Telluride, CO., USA 7<\/strong>, 26 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[282]<\/span><\/strong>Tamiki Komatsuzaki
Open questions in Higher rank saddles and related<\/strong><\/dt>
Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases(7.17-7.27 ,2018), Telluride Intermediate School, Telluride, CO., USA 7<\/strong>, 24 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[281]<\/span><\/strong>Hiroshi Teramoto, Asahi Tsuchida, Yutaro Kabata, Kenji Kondo, Katsusuke Nabeshima, Shy\u016bichi Izumiya, Mikito Toda, Tamiki Komatsuzaki
Normal forms in singularity theory for geometric classifications of local band structures<\/strong><\/dt>
Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases(7.17-7.27 ,2018), Telluride Intermediate School, Telluride, CO., USA 7<\/strong>, 24 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[280]<\/span><\/strong>Sulimon Sattari
A turnstile-based view of multi-exponential decay<\/strong><\/dt>
Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases(7.17-7.27 ,2018), Telluride Intermediate School, Telluride, CO., USA 7<\/strong>, 19 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[279]<\/span><\/strong>Tamiki Komatsuzaki
How One can Extract Energy Landscape from Single -Molecule Time Series under the Existence of Noise?<\/strong><\/dt>
Biophysical Dynamics(7.9-7.13 ,2018), Telluride Intermediate School, Telluride, CO. USA 7<\/strong>, 10 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[278]<\/span><\/strong>Tamiki Komatsuzaki
How One can Extract Energy Landscape from Single-Molecule Time Series under the Existence of Noise?<\/strong><\/dt>
Department Seminar, Johns Hopkins University, Department of Chemistry(7.6 ,2018), Johns Hopkins University, Baltimore, USA 7<\/strong>, 6 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[277]<\/span><\/strong>Hiroshi Teramoto, Asahi Tsuchida, Yutaro Kabata, Kenji Kondo, Katsusuke Nabeshima, Shy\u016bichi Izumiya, Tamiki Komatsuzaki
Normal forms in singularity for geometric classifications of band structures<\/strong><\/dt>
TraX International Conference 2018(5.9-5.10 ,2018), Campus de Cantoblanco of the Universidad Aut\u00f3noma de Madrid, Madrid, Spain 5<\/strong>, 9 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[276]<\/span><\/strong>Sosuke Ito
Stochastic thermodynamics of information<\/strong><\/dt>
Frontiers of complex systems science: soft matter, biophysics, and statistical physics(1.22-1.23 ,2018), Institute of Physics Auditorium, Academia Sinica, Taipei, Taiwan 1<\/strong>, 22 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

2017<\/h3>
[275]<\/span><\/strong>Sulimon Sattari, Tamiki Komatsuzaki
Predicting Biological Cell Aggregation Using Scalable Random Forest Decision Trees<\/strong><\/dt>
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11<\/strong>, 30 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[274]<\/span><\/strong>J. Nicholas Taylor, Tamiki Komatsuzaki
Apparent Nonequilibrium Behavior in Single-Molecule FRET Time-Series Induced by Photophysics<\/strong><\/dt>
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11<\/strong>, 30 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[273]<\/span><\/strong>Sosuke Ito
Thermodynamics and information geometry<\/strong><\/dt>
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11<\/strong>, 30 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[272]<\/span><\/strong>Koji Tabata, Atsuyoshi Nakamura, Tamiki Komatsuzaki
Bad Arm Existence Checking Algorithm<\/strong><\/dt>
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11<\/strong>, 30 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[271]<\/span><\/strong>Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yauaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Microscopic Image Analysis based on Information-theoretic Approach<\/strong><\/dt>
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11<\/strong>, 30 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[270]<\/span><\/strong>Hiroshi Teramoto, Shy\u016bichi Izumiya, Tamiki Komatsuzaki
Toward Molecular Propagation through Degenerated Electron Energy Level Crossings<\/strong><\/dt>
The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11<\/strong>, 30 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[269]<\/span><\/strong>Tamiki Komatsuzaki
How one can extract energy landscape from single molecule time series under the existence of noise?<\/strong><\/dt>
The 2nd Korea-Japan Joint Symposium on Single-Molecule Biophysics(11.8-11.10 ,2017), Seoul National University, Seoul, Korea 11<\/strong>, 8 (invited, oral) <\/dd>
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<\/p>\n\n

[268]<\/span><\/strong>Hiroshi Teramoto
Application of Singularity Theory to Material Sciences<\/strong><\/dt>
Geometric and Algebraic Singularity Theory(9.11-9.15 ,2017), B\u0119dlewo Conference Center, B\u0119dlewo, Poland 9<\/strong>, 13 (oral) <\/dd>
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<\/p>\n\n

[267]<\/span><\/strong>Tamiki Komatsuzaki
Energy'landscapes'learned'from'single'molecule'FRET'time'series:'Role'of'Photobleaching<\/strong><\/dt>
Deciphering complex energy landscape and kinetic network from single molecules to cells: a new challenge to make theories meet experiments(9.3-9.8 ,2017), Hotel Mercure Dijon, Dijon, France 9<\/strong>, 7 (invited, oral) <\/dd>
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<\/p>\n\n

[266]<\/span><\/strong>Sosuke Ito
Thermodynamics of information on biochemical signaling networks<\/strong><\/dt>
Deciphering complex energy landscape and kinetic network from single molecules to cells: a new challenge to make theories meet experiments(9.3-9.8 ,2017), Hotel Mercure Dijon, Dijon, France 9<\/strong>, 6 (invited, oral) <\/dd>
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<\/p>\n\n

[265]<\/span><\/strong>Hiroshi Teramoto
Classification of Hamiltonians in neighborhoods of band crossings in terms of the theory of singularities<\/strong><\/dt>
the Floris Takens seminar series(9.5-9.5 ,2017), University of Groningen, Groningen, The Netherlands 9<\/strong>, 5 (invited, oral) <\/dd>
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<\/p>\n\n

[264]<\/span><\/strong>Tamiki Komatsuzaki
Data-driven mathematics in single cell Raman imaging<\/strong><\/dt>
Telluride Workshop on The Complexity of Dynamics and Kinetics from Single Molecules to Cells(6.20-6.24 ,2017), Telluride Elementary School, Telluride, CO. 6<\/strong>, 20 (invited, oral) <\/dd>
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<\/p>\n\n

[263]<\/span><\/strong>Tamiki Komatsuzaki
Global Transition States in Reaction Network<\/strong><\/dt>
Telluride Workshop on Chemistry & Dynamics in Complex Environments(6.26-6.30 ,2017), Telluride Elementary School, Telluride, CO. 6<\/strong>, 29 (invited, oral) <\/dd>
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<\/p>\n\n

2016<\/h3>
[262]<\/span><\/strong>Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
The Non-equilibrium Effects on Reaction Kinetics of F1-ATPase<\/strong><\/dt>
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12<\/strong>, 13 (Poster) <\/dd>
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<\/p>\n\n

[261]<\/span><\/strong>J.N. Taylor, Chun-Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-Driven Approaches to Raman Microscopic Image Analysis<\/strong><\/dt>
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12<\/strong>, 13 (Poster) <\/dd>
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<\/p>\n\n

[260]<\/span><\/strong>Preetom Nag, Khalifa Mohammad Helal, Hiroshi Teramoto, Chun-Biu Li, Hisashi Haga, Tamiki Komatsuzaki
Dynamical Heterogeneity During Collective Migration of MDCK Epithelial Monolayer<\/strong><\/dt>
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12<\/strong>, 13 (Poster) <\/dd>
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<\/p>\n\n

[259]<\/span><\/strong>Khalifa Mohammad Helal, Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Hisashi Haga, Tamiki Komatsuzak
Collective Cell Migration: Underlying Dynamics and Emergent Structures of Heterogeneity<\/strong><\/dt>
The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12<\/strong>, 13 (Poster) <\/dd>
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<\/p>\n\n

[258]<\/span><\/strong>Tamiki Komatsuzaki
Molecular Functions and Energy Landscapes Extracted from Single Molecule Time Series Data<\/strong><\/dt>
HOKUDAI-NCTU Joint Symposium on Nano, Photo and Bio Sciences in 2016(10.4-10.5 ,2016), Lecture Hall, Frontier Research in Applied sciences Building, Hokkaido University, Sapporo, Hokkaido 10<\/strong>, 4 (invited, oral) <\/dd>
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<\/p>\n\n

[257]<\/span><\/strong>Satoru Tsugawa
Plant Science from Viewpoint of Statistical Mechanics<\/strong><\/dt>
Human Frontier Science Program 5th project conference(7.7-7.9 ,2016), Ibis Singapore on Bencoolen, Singapore 7<\/strong>, 7 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[256]<\/span><\/strong> Tamiki Komatsuzaki
A kinetic disconnectivity graph to decode timescale hierarchy buried in reaction networks<\/strong><\/dt>
Landscapes workshop 2016(6.27-7.3 ,2016), The Centre IGESA, Porquerolles, France 6<\/strong>, 28 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[255]<\/span><\/strong>Tamiki Komatsuzaki
Single Molecule Biophysics: How can One extract the Underlying Markovian\/non-Markovian Network from Noisy and Short Time Series?<\/strong><\/dt>
IXXI-ENS Lyon seminar(6.17 ,2016), ENS de Lyon, Lyon, France 6<\/strong>, 17 (invited, oral) <\/dd>
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<\/p>\n\n

[254]<\/span><\/strong>Tamiki Komatsuzaki
Phase Space geometry and Chemical Reaction Dynamics: Past, Present, and Future<\/strong><\/dt>
Seminar of the ICB\/Nanosciences department(6.21 ,2016), Laboratoire Interdisciplinaire Carnot de Bourgogne, Dijon, France 6<\/strong>, 21 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[253]<\/span><\/strong> Tamiki Komatsuzaki
Defining Global Transition State over an Entire Markov Network<\/strong><\/dt>
Seminar of the ICB\/Nanosciences department(6.14 ,2016), Laboratoire Interdisciplinaire Carnot de Bourgogne, Dijon, France 6<\/strong>, 14 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[252]<\/span><\/strong>Tamiki Komatsuzaki
Single Molecule Biophysics: How can One Dig the Underlying Network from Noisy and Short Time Series?<\/strong><\/dt>
Seminar of the ICB\/Nanosciences department(6.10 ,2016), Laboratoire Interdisciplinaire Carnot de Bourgogne, Dijon, France 6<\/strong>, 10 (invited, oral) <\/dd>
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<\/p>\n\n

[251]<\/span><\/strong>Tamiki Komatsuzaki
Defining Global Transition State over an Entire Markov Network<\/strong><\/dt>
Seminar at Beijing Computational Science Research Center(5.24-5.24 ,2016), Beijing Computational Science Research Center, Beijing, China 5<\/strong>, 24 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[250]<\/span><\/strong>Chun-Biu Li
A Nano-Scale Key-and-Unlock Mechanism in the F1-ATPase revealed by Single Molecule Time Series Analysis<\/strong><\/dt>
Seminar at Beijing Computational Science Research Center(5.20 ,2016), Beijing Computational Science Research Center, Beijing, China 5<\/strong>, 20 (invited, oral) <\/dd>
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<\/p>\n\n

[249]<\/span><\/strong>Chun Biu Li
From single molecule time series to networks and dynamics: approaches from information theory<\/strong><\/dt>
Conference on the Time in Biological Systems and Beyond(3.28-3.29 ,2016), National Tsing Hua University, Hsinchu, Taiwan 3<\/strong>, 29 (invited, oral) <\/dd>
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<\/p>\n\n

[248]<\/span><\/strong> Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Classification of Electron Energy Level Crossings in terms of the Theory of Singularities and Analysis of Non-Adiabatic Transitions around the Crossings<\/strong><\/dt>
Computational Chemistry (CC) Symposium in ICCMSE(3.17-3.20 ,2016), Metropolitan Hotel, Athens, Greece 3<\/strong>, 17 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[247]<\/span><\/strong>J. Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images<\/strong><\/dt>
The Biophysical Society 2016 BPS Annual Meeting(2.27-3.2 ,2016), Los Angeles Convention Center, Los Angeles, USA 2<\/strong>, 27 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[246]<\/span><\/strong>Chun Biu Li
Time Series, Networks and Dynamics: Constructing Hidden Markov Model from Information Theory<\/strong><\/dt>
Department Seminar in Department of Chemistry, Computational Biophysical Chemistry(2.22 ,2016), Hong Kong University, Hong Kong, China 2<\/strong>, 22 (invited, oral) <\/dd>
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<\/p>\n\n

2015<\/h3>
[245]<\/span><\/strong>Tamiki Komatsuzaki
Toward deciphering cell individuality in systems biology<\/strong><\/dt>
Symposium #137 Life at Small Copy Numbers (The 2015 International Chemical Congress of Pacific Basin Societies)(12.19-12.20 ,2015), Sheraton Waikiki, Hawaii, USA 12<\/strong>, 20 (invited, oral) <\/dd>
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<\/p>\n\n

[244]<\/span><\/strong>Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images<\/strong><\/dt>
Symposium #121 Deciphering molecular complexity from protein functions to cellular network (The 2015 International Chemical Congress of Pacific Basin Societies)(12.15-12.16 ,2015), Convention Center, Hawaii, USA 12<\/strong>, 16 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[243]<\/span><\/strong>Tamiki Komatsuzaki
Energy landscapes and conformation network learned from single molecule time series<\/strong><\/dt>
Symposium #121 Deciphering molecular complexity from protein functions to cellular network (The 2015 International Chemical Congress of Pacific Basin Societies)(12.15-12.16 ,2015), Convention Center, Hawaii, USA 12<\/strong>, 15 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[242]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Dynamical Reaction Theory: Beyond the conventional perturbation theory<\/strong><\/dt>
Colloquium on kinetics and scattering theory for astrophysics (Nov 26-27) (in a part of the extended workshop \u201cTheory of Gas Phase Scattering and Reactivity for Astrophysics(Nov 23-Dec 8)\u201d along COST \u2018Our chemical History\u2019Action CM1401)(11.16-11.27 ,2015), Max Planck Institute of Colloids and Interfaces, Potsdam, Germany 11<\/strong>, 27 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[241]<\/span><\/strong>Tamiki Komatsuzaki
Phase Space geometry and Chemical Reaction Dynamics: Past, Present, and Future<\/strong><\/dt>
Colloquium on kinetics and scattering theory for astrophysics (Nov 26-27) (in a part of the extended workshop \u201cTheory of Gas Phase Scattering and Reactivity for Astrophysics(Nov 23-Dec 8)\u201d along COST \u2018Our chemical History\u2019Action CM1401)(11.16-11.27 ,2015), Max Planck Institute of Colloids and Interfaces, Potsdam, Germany 11<\/strong>, 27 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[240]<\/span><\/strong>Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Tetsuya Taketsugu, Tamiki Komatsuzaki
Developing high precision algorithm to predict observation timescale hierarchy of an isomerization reaction network<\/strong><\/dt>
The 16th RIES-Hokudai International Symposium(11.10-11.11 ,2015), Chateraise Gateaux Kingdom Sapporo, Sapporo, Japan 11<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[239]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Classification and Control of electron energy level crossings in terms of the theory of singularity<\/strong><\/dt>
The 16th RIES-Hokudai International Symposium(11.10-11.11 ,2015), Chateraise Gateaux Kingdom Sapporo, Sapporo, Japan 11<\/strong>, 10 (Poster) <\/dd>
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<\/p>\n\n

[238]<\/span><\/strong>Genming Wang, Chun-Biu Li, Hitoshi Tatsumi, Tamiki Komatsuzaki
Kinetics of Multiple conductance levels of Mechanosensitive Ion Channel<\/strong><\/dt>
The 16th RIES-Hokudai International Symposium(11.10-11.11 ,2015), Chateraise Gateaux Kingdom Sapporo, Sapporo, Japan 11<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[237]<\/span><\/strong>Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
The Onset of Non-equilibrium Effects at High Temperature in the Reaction Kinetics of F1-ATPase<\/strong><\/dt>
The 16th RIES-Hokudai International Symposium(11.10-11.11 ,2015), Chateraise Gateaux Kingdom Sapporo, Sapporo, Japan 11<\/strong>, 10 (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[236]<\/span><\/strong>T. Komatsuzaki
Single Molecule Biophysics: How can One Dig the Underlying Network from Noisy and Short Time Series?<\/strong><\/dt>
International Conference on \u201cChallenges in Data Science: a Complex Systems Perspective(10.14-10.17 ,2015), Torino, Italy 10<\/strong>, 14 ((invited)\u57fa\u8abf\u8b1b\u6f14(keynote)) <\/dd>
<\/div><\/div>

<\/p>\n\n

[235]<\/span><\/strong>Chun-Biu Li
The Key and Unlock Mechanisms in F1-ATPase Unveiled by Single Molecule Time Series Analysis<\/strong><\/dt>
The 4th Workshop on Molecular & Chemical Kinetics(9.7-9.9 ,2015), Berlin, Germany (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[234]<\/span><\/strong>Tamiki Komatsuzaki
Transition States from Gas Phase, Condensed Phase to Complex Networks<\/strong><\/dt>
Telluride summer workshop \u201cGeometry of Chemical Reaction Dynamics\u201d(7.28-8.1 ,2015), Telluride Elementary School, Telluride, CO. 8<\/strong>, 1 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[233]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Masahiko Takahashi, Hirohiko Kohno, Tamiki Komatsuzaki
A Global Dynamical Switching of a Reaction Coordinate and its Experimental Observability<\/strong><\/dt>
Telluride summer workshop \u201cGeometry of Chemical Reaction Dynamics\u201d(7.27-8.7 ,2015), Telluride Elementary School, Telluride, USA 8<\/strong>, 1 (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[232]<\/span><\/strong>Chun-Biu Li
Searching for New Mathematical Frameworks to Understand Complex Systems in the Real World<\/strong><\/dt>
Cross-border Forum of \u201cMoney problems, Job market, and Chaos: mathematical and economical perspective on distribution of value from a viewpoint of Italy\u2019s and Japan\u2019s Economy(7.29 ,2015), Hokkaido Univ., Sapporo, Japan 7<\/strong>, 29 (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[231]<\/span><\/strong>Chu-Biu Li
Detection of Time Dependent Causality: An Information-theoretic Approach<\/strong><\/dt>
Dynamical System Seminar(7.14 ,2015), Math. Department, Hokkaido Univ. 7<\/strong>, 14 (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[230]<\/span><\/strong>T. Komatsuzaki
How can we define a transition state over a network?<\/strong><\/dt>
R. Stephen Berry Tribune Symposium(6.23-6.26 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6<\/strong>, 26 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[229]<\/span><\/strong>T. Komatsuzaki
A kinetic disconnectivity graph to decode timescale hierarchy buried in reaction networks<\/strong><\/dt>
Chemistry & Dynamics in Complex Environments(6.23-6.26 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6<\/strong>, 23 (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[228]<\/span><\/strong>Nick Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series<\/strong><\/dt>
The Complexity of Dynamics Kinetics from Single Molecules to Cells(6.14-6.18 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6<\/strong>, 18 (Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[227]<\/span><\/strong>Tamiki Komatsuzaki
Energy Landscapes learned from Single-Molecule Time-Series: Dimensionality and Disconnectivity Graph<\/strong><\/dt>
The Complexity of Dynamics Kinetics from Single Molecules to Cells(6.14-6.18 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6<\/strong>, 15 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[226]<\/span><\/strong>Chun-Biu Li
The Roles of ATP Hydrolysis Revealed by Single Molecule Time Series Analysis of Rotary Fluctuations in F1-ATPase<\/strong><\/dt>
The Complexity of Dynamics Kinetics from Single Molecules to Cells(6.14-6.18 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6<\/strong>, 14 (invited,oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[225]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Masahiko Takahashi, Hirohiko Kono, Tamiki Komatsuzaki
A Global Dynamical Switching of a Reaction Coordinate and its Experimental Observability<\/strong><\/dt>
31st Symposium on Chemical Kinetics and Dynamics(6.3-6.5 ,2015), Frontier Research in Applied Sciences Bldg., Faculty of Engineering, Hokkaido University, Sapporo, Hokkaido 6<\/strong>, 3 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[224]<\/span><\/strong>Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki
Deciphering timescale hierarchy encoded in complex reaction networks<\/strong><\/dt>
31st Symposium on Chemical Kinetics and Dynamics(6.3-6.5 ,2015), Frontier Research in Applied Sciences Bldg., Faculty of Engineering, Hokkaido University, Sapporo, Hokkaido 6<\/strong>, 3 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[223]<\/span><\/strong>Tamiki Komatsuzaki, Mikito Toda, Hiroshi Teramoto
Dynamical Switching of Reactive and Nonreactive Modes at High Energies<\/strong><\/dt>
2015 SIAM Conference on Dynamical Systems(5.17-5.21 ,2015), Snowbird Ski and Summer Resort, Snowbird, Utah, USA 5<\/strong>, 20 (invited, oral) <\/dd>
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<\/p>\n\n

[222]<\/span><\/strong>Tamiki Komatsuzaki
A Dynamical Switching of Reactive and Nonreactive Modes at High Energies epartment of Chemistry and Chemical Biology<\/strong><\/dt>
Department Seminar in Department of Chemistry and Chemical Biology(5.15 ,2015), Cornell University, Ithaca, NY 14850 5<\/strong>, 15 (invited, oral) <\/dd>
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<\/p>\n\n

[221]<\/span><\/strong>Tamiki Komatsuzaki
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series<\/strong><\/dt>
Department Seminar in Department of Chemistry(5.8 ,2015), Boston University, Boston, MA 02215 USA 5<\/strong>, 8 (invited, oral) <\/dd>
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<\/p>\n\n

[220]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
Identifying different reaction processes in terms of graph laplacian<\/strong><\/dt>
IlLuminyating 2015(5.7-5.8 ,2015), Instituto de Ciencias Matem\u00e1ticas, Universidad Aut\u00f3noma de Madrid, Madrid, Spain 5<\/strong>, 7 (invited, oral) <\/dd>
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<\/p>\n\n

[219]<\/span><\/strong>Chun-Biu Li
Robust Construction of Dwell-Time Statistics from Experimental and Simulation Time Series<\/strong><\/dt>
Department seminar(4.17 ,2015), Max Planck Institute of Colloids and Interfaces, Potsdam, Germany 4<\/strong>, 17 (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[218]<\/span><\/strong>Chun-Biu Li
Time Series, Networks and Dynamics: Constructing Hidden Markov Model from Information Theory<\/strong><\/dt>
Department seminar(4.14 ,2015), Department of Mathematics, Computer Science and Bioinformatics, Free University of Berlin, Germany 4<\/strong>, 14 (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[217]<\/span><\/strong>Tamiki Komatsuzaki
Energy landscapes derived from single molecule spectroscopy and complex networks<\/strong><\/dt>
IMS Symposium on \u201cArchitecture, dynamics, and functionality of molecular biosystems\u201d(3.30-3.31 ,2015), Institute for Molecular Science (IMS), Okazaki, Japan 3<\/strong>, 31 (\u62db\u5f85\u8b1b\u6f14) <\/dd>
<\/div><\/div>

<\/p>\n\n

[216]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Understandings of Chemical Reaction Dynamics in terms of Dynamical System Theory<\/strong><\/dt>
Computational Chemistry (CC) Symposium in ICCMSE(3.20-3.23 ,2015), Metropolitan Hotel, Athens, Greece 3<\/strong>, 20 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[215]<\/span><\/strong>Satoru Tsugawa
An Extraction Method of Alignment Structure from Raw Microscopy data<\/strong><\/dt>
Workshop on dynamical systems and computation 2015\u200e(3.3-3.6 ,2015), Hokkaido University, Sapporo, Hokkaido 3<\/strong>, 3 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[214]<\/span><\/strong>Yutaka Nagahata, Hiroshi Teramoto, Takashi Horiyama, Chun-Biu Li, Tamiki Komatsuzaki
Timescale hierarchies of complex reaction network<\/strong><\/dt>
Workshop on dynamical systems and computation 2015\u200e(3.3-3.6 ,2015), Hokkaido University, Sapporo, Hokkaido 3<\/strong>, 4 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[213]<\/span><\/strong>B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis<\/strong><\/dt>
2015 Oil & Gas High Performance Computing Workshop(3.4-3.5 ,2015), BioScience Research Collaborative (BRC) Building, Rice University, Houston, USA 3<\/strong>, 5 (poster) <\/dd>
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<\/p>\n\n

[212]<\/span><\/strong>Hiroshi Teramoto
Understandings of Chemical Reaction Dynamics in terms of Dynamical System Theory<\/strong><\/dt>
Workshop on dynamical systems and computation 2015\u200e(3.3-3.6 ,2015), Hokkaido University, Sapporo, Hokkaido 3<\/strong>, 6 (oral) <\/dd>
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<\/p>\n\n

[211]<\/span><\/strong>Tamiki Komatsuzaki
Hierarchical structure of no-return transition states<\/strong><\/dt>
Spectroscopy and Dynamics of Molecules and Clusters 2015(2.19-2.22 ,2015), The Naini Retreat, Nainital, India 2<\/strong>, 21 (invited, oral) <\/dd>
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<\/p>\n\n

[210]<\/span><\/strong>Tamiki Komatsuzaki
Chance and necessity in reactions under thermal fluctuation & chaos Department of Chemistry<\/strong><\/dt>
Indian Institute of Technology Kanpur seminar(2.17 ,2015), Indian Institute of Technology Kanpur, Kanpur, India 2<\/strong>, 17 (invited, oral) <\/dd>
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<\/p>\n\n

[209]<\/span><\/strong>Chun Biu Li
Single Molecule Time Series Analysis of F1-ATPase to Unravel the Role of ATP Hydrolysis and Thermal Fluctuations<\/strong><\/dt>
Seminar at Max Planck Institute of Colloids and Interfaces(1.7 ,2015), Max Planck Institute of Colloids and Interfaces, Potsdam, Germany 1<\/strong>, 7 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[208]<\/span><\/strong>Bo Shuang, David Cooper, J. Nick Taylor, Lydia Kisley, Jixin Chen, Wenxiao Wang, Chun Biu Li, Tamiki Komatsuzaki, Chrisy Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis<\/strong><\/dt>
The 2015 Quantitative BioImaging Conference(1.7-1.9 ,2015), Institut Pasteur, Paris, France (poster) <\/dd>
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<\/p>\n\n

[207]<\/span><\/strong>Tamiki Komatsuzaki
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series<\/strong><\/dt>
The 8th biennial workshop on Single Molecule Biophysics (SMB)(1.4-1.9 ,2015), The Aspen Center for Physics, Aspen, USA 1<\/strong>, 4 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

2014<\/h3>
[206]<\/span><\/strong>Satoru Tsugawa, Chun-Biu Li, Tamiki Komatsuzaki
An extraction method of local microtubule alignments in Arabidopsis sepal<\/strong><\/dt>
The 15th Ries-Hokudai International Symposium \u97ff[hibiki](12.16-12.17 ,2014), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12<\/strong>, 16 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[205]<\/span><\/strong>J.N. Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series<\/strong><\/dt>
The 15th Ries-Hokudai International Symposium \u97ff[hibiki](12.16-12.17 ,2014), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12<\/strong>, 16 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[204]<\/span><\/strong>Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
Temperature Dependency of Molecular Motor<\/strong><\/dt>
The 15th Ries-Hokudai International Symposium \u97ff[hibiki](12.16-12.17 ,2014), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12<\/strong>, 16 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[203]<\/span><\/strong>Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Chun-Biu Li, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki
An extraction of embedded timescale hierarchies buried in complex reaction network<\/strong><\/dt>
The 15th Ries-Hokudai International Symposium \u97ff[hibiki](12.16-12.17 ,2014), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12<\/strong>, 16 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[202]<\/span><\/strong>Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Joseph Z. Terdik, Norbert F. Scherer, Tamiki Komatsuzaki
Local-heterogeneous responses and transient dynamics in colloidal fluids<\/strong><\/dt>
The 15th Ries-Hokudai International Symposium \u97ff[hibiki](12.16-12.17 ,2014), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12<\/strong>, 16 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[201]<\/span><\/strong> Tamiki Komatsuzaki
A kinetic disconnectivity graph to decode timescale hierarchy buried in reaction networks<\/strong><\/dt>
XIXth International Workshop on Quantum Systems in Chemistry, Physics and Biology(11.11-11.17 ,2014), Fullon Hotel Tamsui Fishermen's Wharf, New Taipei City, Taiwan 11<\/strong>, 16 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[200]<\/span><\/strong>Satoru Tsugawa
Toward extraction of global coordination despite local variability in plant development<\/strong><\/dt>
New Challenges in Complex Systems Science(10.24-10.26 ,2014), Nishiwaseda Campus, Waseda University, Tokyo, Japan 10<\/strong>, 25 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[199]<\/span><\/strong>Yuji Tamiya, Chun-Biu Li, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki
Data Driven Approach to Dynamics of Protein Motor<\/strong><\/dt>
New Challenges in Complex Systems Science(10.24-10.26 ,2014), Nishiwaseda Campus, Waseda University, Tokyo, Japan 10<\/strong>, 25 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[198]<\/span><\/strong>Chun Biu Li
Challenges in Understanding Complex Systems at the Single Molecule Level<\/strong><\/dt>
New Challenges in Complex Systems Science(10.24-10.26 ,2014), Nishiwaseda Campus, Waseda University, Tokyo, Japan 10<\/strong>, 25 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[197]<\/span><\/strong> Tamiki Komatsuzaki
Chemical Reaction Dynamics and Chaos<\/strong><\/dt>
New Challenges in Complex Systems Science(10.24-10.26 ,2014), Nishiwaseda Campus, Waseda University, Tokyo, Japan 10<\/strong>, 24 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[196]<\/span><\/strong> Tamiki Komatsuzaki
A Dynamical Switching of Reactive Mode \u21d4 Nonreactive Mode at High Energies for a Hydrogen Atom in Crossed Electric and Magnetic Fields<\/strong><\/dt>
11th Asian International Seminar on Atomic and Molecular Physics(10.5-10.10 ,2014), Katahira Campus, Tohoku University, Sendai, Miyagi 10<\/strong>, 8 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[195]<\/span><\/strong>Hiroshi Teramoto
Extracting coherent molecular vibrational modes by nonlinear time series analysis<\/strong><\/dt>
Workshop on Theory and Applications of Random\/Non-autonomous Dynamical Systems(9.8-9.15 ,2014), Dynamical Systems Group, Department of Mathematics, Imperial College London, London, UK 9<\/strong>, 11 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[194]<\/span><\/strong>Satoru Tsugawa
Toward extraction of mechanical properties in plant cell growth<\/strong><\/dt>
Workshop \"What kinds of dynamical feature can we extract from data?\"(8.27-8.28 ,2014), Niseko town center, Niseko, Hokkaido 8<\/strong>, 27 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[193]<\/span><\/strong>Hiroshi Teramoto
Extracting molecular coherent vibrational modes by nonlinear time series analysis<\/strong><\/dt>
Workshop \"What kinds of dynamical feature can we extract from data?\"(8.27-8.28 ,2014), Niseko town center, Niseko, Hokkaido 8<\/strong>, 27 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[192]<\/span><\/strong>Nick Taylor
Extracting Free Energy Landscapes from Noisy Single-Molecule<\/strong><\/dt>
Workshop \"What kinds of dynamical feature can we extract from data?\"(8.27-8.28 ,2014), Niseko town center, Niseko, Hokkaido 8<\/strong>, 27 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[191]<\/span><\/strong> Tamiki Komatsuzaki
Energy landscapes learned from time series and networks<\/strong><\/dt>
Energy Landscapes : From Single Molecules to Soft Matter(8.15-8.21 ,2014), Durham University, Durham, UK 8<\/strong>, 20 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[190]<\/span><\/strong> Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Reaction Coordinate Switching Mechanism, on the Possibility of Its Experimental Verification and Its Quantum Manifestation<\/strong><\/dt>
The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications(7.7-7.11 ,2014), Universidad Aut\u00f3noma de Madrid, Madrid, Spain 7<\/strong>, 8 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[189]<\/span><\/strong>Tamiki Komatsuzaki
Chance and Necessity in Reactions Under Chaos and Stochastic Fluctuation<\/strong><\/dt>
The 10th AIMS Conference on Dynamical Systems, Differential Equations and Applications(7.7-7.11 ,2014), Universidad Aut\u00f3noma de Madrid, Madrid, Spain 7<\/strong>, 7 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[188]<\/span><\/strong>Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series<\/strong><\/dt>
Macromolecular dynamics: structure, function and diseases(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 7<\/strong>, 3 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[187]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Extracting Cooperative modes between a biological molecule and water molecules<\/strong><\/dt>
International Workshop \"Over the Barriers of Transition Paths: Dynamical Processes in Proteins and Complex Molecular Systems\"(6.28 ,2014), Tokyo Institute of Technology, Yokohama, Kanagawa 6<\/strong>, 28 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[186]<\/span><\/strong> Tamiki Komatsuzaki
Energy Landscapes Constructed From Single-molecule Time Series And Reaction Networks<\/strong><\/dt>
Macromolecular dynamics: structure, function and diseases(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 6<\/strong>, 27 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[185]<\/span><\/strong> Tamiki Komatsuzaki
Theories Should Meet Experiments: What Can We Extract From Time Series Data?<\/strong><\/dt>
CSRC Seminar(6.23 ,2014), Beijing Computational Science Research Center (CSRC), Beijing, China 6<\/strong>, 23 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[184]<\/span><\/strong>Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series<\/strong><\/dt>
ICBP 8th IUPAP international conference on biological physics(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 6<\/strong>, 21 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[183]<\/span><\/strong> Tamiki Komatsuzaki
Energy Landscapes Constructed From Single-Molecule Time Series and Reaction Networks<\/strong><\/dt>
The 2014 Les Houches - TSRC Protein Dynamics Workshop(5.18-5.23 ,2014), Ecole de Physique des Houches, Les Houches, France 5<\/strong>, 21 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[182]<\/span><\/strong>Nag Preetom
Extracting cage breaking motion and dynamical heterogeneity in colloidal fluids in terms of Lagrangian Coherent Structures (LCSs)<\/strong><\/dt>
Workshop on Lagrangian Coherent Structures and Dynamical Systems(3. 5-3. 7 ,2014), Hokkaido University, Sapporo, Japan 3<\/strong>, 7 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[181]<\/span><\/strong> Hiroshi Teramoto
Transportation barriers in dynamical systems<\/strong><\/dt>
Workshop on Lagrangian Coherent Structures and Dynamical Systems(3. 5-3. 7 ,2014), Hokkaido University, Sapporo, Japan 3<\/strong>, 7 (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

2013<\/h3>
[180]<\/span><\/strong>Chun Biu Li
Time Series, Networks and Dynamics: A Perspective from the Information Theory<\/strong><\/dt>
The 14th RIES-HOKUDAI International Symposium \u7db2[mou](12. 11-12. 12 ,2013), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Japan 12<\/strong>, 11 (invited, oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[179]<\/span><\/strong> Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
Relation between dynamics of individual trajectories and that of their ensemble distributions -Spectral Analysis of Individual Trajectories-<\/strong><\/dt>
The 14th RIES-HOKUDAI International Symposium \u7db2[mou](12. 11-12. 12 ,2013), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Japan 12<\/strong>, 11 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[178]<\/span><\/strong>J. N. Taylor, Chun Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
An Information-Theoretical Approach to Local Equilibrium State Analysis for Single-Molecule Time-Series<\/strong><\/dt>
The 14th RIES-HOKUDAI International Symposium \u7db2[mou](12. 11-12. 12 ,2013), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Japan 12<\/strong>, 11 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[177]<\/span><\/strong>Tahmina Sultana, Hiroaki Takagi, Miki Morimatsu, Hiroshi Teramoto, Chun Biu Li, Yasushi Sako, Tamiki Komatsuzaki
Scrutiny of Heterogeneity in Memory by Extracting Reaction Network Buried in Single Molecule Time Series of EGFR and Grb2<\/strong><\/dt>
The 14th RIES-HOKUDAI International Symposium \u7db2[mou](12. 11-12. 12 ,2013), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Japan 12<\/strong>, 11 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[176]<\/span><\/strong>Yutaka Nagahata, Hiroshi Teramoto, Takashi Horiyama, Chun Biu Li, Tamiki Komatsuzaki
Toward understanding hierarchical structure of complex reaction networks extracted from single molecule time series<\/strong><\/dt>
The 14th RIES-HOKUDAI International Symposium \u7db2[mou](12. 11-12. 12 ,2013), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Japan 12<\/strong>, 11 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[175]<\/span><\/strong>Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Coherent dynamics in colloidal fluids in terms of Lagrangian Coherent Structures (LCSs)<\/strong><\/dt>
The 14th RIES-HOKUDAI International Symposium \u7db2[mou](12. 11-12. 12 ,2013), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Japan 12<\/strong>, 11 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[174]<\/span><\/strong>Naoki Miyagawa, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Information of multi-order correlation in pattern formation<\/strong><\/dt>
The 14th RIES-HOKUDAI International Symposium \u7db2[mou](12. 11-12. 12 ,2013), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Japan 12<\/strong>, 11 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[173]<\/span><\/strong>Kunihiko Ibe, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Extracting the Protein-folding Dynamics from Single Molecule Time Series<\/strong><\/dt>
The 14th RIES-HOKUDAI International Symposium \u7db2[mou](12. 11-12. 12 ,2013), CH\u00c2TERAIS\u00c9 Gateaux Kingdom SAPPORO, Sapporo, Japan 12<\/strong>, 11 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[172]<\/span><\/strong>Shinnosuke Kawai, Hiroshi Teramoto, Tamiki Komatsuzaki
Essential Coordinates to Describe the Dynamics of Many-atom Systems<\/strong><\/dt>
5th JCS International Symposium on Theoretical Chemistry(12. 2-12. 6 ,2013), Todai-ji Culture Center , Nara, Japan 12<\/strong>, 3 (invited, poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[171]<\/span><\/strong>Chun-Biu Li, Tamiki Komatsuzaki
Toward the Decoding of Single Nucleotides Tunneling Current by Change Point Analysis<\/strong><\/dt>
G3meeting,Academia Sinica(10.21-10.22 ,2013) (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[170]<\/span><\/strong>James N. Taylor, Shinnosuke Kawai, Chun Biu Li, Tamiki Komatsuzaki
Let Systems Tell for themselves: Energy Landscape and Complex Network<\/strong><\/dt>
G3meeting,Academia Sinica(10.21-10.23 ,2013), Taipei, Taiwan<\/dd>
<\/div><\/div>

<\/p>\n\n

[169]<\/span><\/strong>Chun-Biu Li
When Computational Mechanics Meets Single Molecule Time Series<\/strong><\/dt>
2013 International Symposium on Nonlinear Theory and its Applications(9.8-9.11 ,2013), Santa Fe Community Convention Center, Santa Fe , US (invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[168]<\/span><\/strong>Mootz, H.D., Komatsuzaki, T, Yang, H., Sun, X., Morrell, T.E., Rafalska-Metcalf, I.U., Alfermann
Dynamical Conformation Coordinations in Non-Ribosomal Peptide Synthetases<\/strong><\/dt>
HFSP 2013 Awardees Meeting ,The Palais de la Musique et des Congres (PMC)(7.7-7.10 ,2013), Strasbourg, France (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[167]<\/span><\/strong>Tamiki Komatsuzaki
Revisiting Energy Landscape, Timescale, Coarse-Graining<\/strong><\/dt>
Chemistry and Dynamics in Complex Environments(6.25-6.29 ,2013), Telluride Intermediate School, Telluride, CO., US (invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[166]<\/span><\/strong>Hiroshi Teramoto
Coherent Dynamics in Colloidal Fluids in terms of Lagrangian Coherent Structure<\/strong><\/dt>
The Complexity of Dynamics and Kinetics in Many Dimensions(6.16-6.20 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[165]<\/span><\/strong>Yutaka Nagahata, Hiroshi Teramoto, Chun-Biu Li, Tamiki Komatsuzaki
Identifying states in Markov chain steady state network extracted from time series by finding minimum transition probability<\/strong><\/dt>
The Complexity of Dynamics and Kinetics in Many Dimensions(6.18 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[164]<\/span><\/strong>Chun-Biu Li
Does Dynamic Disorder Exist in the Enzymatic Reactions on the Single Molecule Level?<\/strong><\/dt>
The Complexity of Dynamics and Kinetics in Many Dimensions(6.16-6.17 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[163]<\/span><\/strong>Tamiki Komatsuzaki
Revisiting Energy Landscape & Extracting it from FRET measurement<\/strong><\/dt>
The Complexity of Dynamics and Kinetics in Many Dimensions(6.16-6.20 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[162]<\/span><\/strong>Tamiki Komatsuzaki
Phase Space Geometrical Aspects in Condensed Phase Reactions<\/strong><\/dt>
Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases (6.10-6.14 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[161]<\/span><\/strong>Yutaka Nagahata, Hiroshi Teramoto, Chun-Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
Reactivity Boundaries to Separate the Fate of a Chemical Reaction Associated with Multiple Saddles<\/strong><\/dt>
Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases ,Telluride Intermediate School(6.13 ,2013), Telluride, CO., US (Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[160]<\/span><\/strong>Hiroshi Teramoto
Breakdown of Normally Hyperbolic Invariant Manifolds, its Consequences and Quantum Manifestation<\/strong><\/dt>
,Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases(6.12 ,2013), Telluride Intermediate School, Telluride, CO., US (Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[159]<\/span><\/strong>Hiroshi Teramoto
Detecting and analyzing methods of normally hyperbolic invariant manifolds<\/strong><\/dt>
XXX\u2162 Dynamics Days Europe-Madrid 2013(6.3-6.7 ,2013), Madrid, Spain (invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[158]<\/span><\/strong>Shinnosuke Kawai, David Cooper, Christy Landes, Henning D. Mootz, Haw Yang, Tamiki Komatsuzaki
Unbiased estimation of physical properties in noisy experimental data<\/strong><\/dt>
IMS Workshop on \"Hierarchical Molecular Dynamics: From Ultrafast Spectroscopy to Single Molecule Measurements\"(5.25-5.26 ,2013), NINS Okazaki Conference Center, Okazaki, Aichi, Japan (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[157]<\/span><\/strong>Tamiki Komatsuzaki
A microscopic ruler tells us the underlying networks in single molecule measurements<\/strong><\/dt>
Nanoscale Science Seminars 2013:A Microscopic ruler tells us the underlying networks in single molecule measurements(5.13 ,2013), Max Planck Institute, Stuttgart, Germany (invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[156]<\/span><\/strong>Hiroshi Teramoto
Detecting and analyzing methods of normally hyperbolic invariant manifolds<\/strong><\/dt>
Illuminating 2013: Dynamical Perspectives on Molecular Processes(5.8-5.10 ,2013), Loughborough University, , Loughborough, Leicestershir, UK (invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[155]<\/span><\/strong>Tamiki Komatsuzaki
Toward Deciphering Molecular Individuality in Systems Biology<\/strong><\/dt>
French\u2010Japanese Seminar on 'Bioinspired Methods and Applications'(2.4-2.6 ,2013), Embassy of France, Tokyo and LIMMS, Institute of Industrial Science, Tokyo University, Japan (invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[154]<\/span><\/strong>Chun Biu Li, Tamiki Komatsuzaki
Toward deciphering molecular individuality in systems biology<\/strong><\/dt>
Gordon Conference on Stochastic Physics in Biology: Foundations and Current Trends(1.13-1.18 ,2013), Ventura, CA, US (Poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[153]<\/span><\/strong>Tamiki Komatsuzaki
Let Single Molecule Time Series Tell for Itself: Energy Landscape and Complex Network<\/strong><\/dt>
4-th France-Japan Joint Seminar: Imaging of spatiotemporal hierarchies in living cells? an overview of dynamics from molecules to cells ?(1.7-1.11 ,2013), RIKEN Harima Institute \/ SPring-8 \/ SACLA,Sayo-gun, Hyogo, Japan (invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[152]<\/span><\/strong>Tamiki Komatsuzaki
Let Single Molecule Time Series Tell for Itself: Energy Landscape and Complex Network<\/strong><\/dt>
4-th France-Japan Joint Seminar: Imaging of spatiotemporal hierarchies in living cells? an overview of dynamics from molecules to cells ?( ,2013), RIKEN Harima Institute \/ SPring-8 \/ SACLA,Sayo-gun, Hyogo, Japan 1<\/strong>, 7-11 (invited, Oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

2012<\/h3>
[151]<\/span><\/strong>Tamiki\u3000Komatsuzaki
Theories Should Meet Measurements: What Can We Extract from Time Series Data?<\/strong><\/dt>
The 2012 WPI-AIMR Annual Workshop(2.22 ,2012), Sendai International Center (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[150]<\/span><\/strong>Tahmina\u3000Sultana, Hiroshi Teramoto, Chun Biu Li, Tamiki\u3000Komatsuzaki
Extracting the Reaction Network Buried in Single Molecule Time Series of Epidermal Growth Factor Receptor (EGFR) and Growth Factor Receptor-Bound\u3000Protein 2 (Grb2) in Cytoplasm<\/strong><\/dt>
IGP International Symposium 2012(3.2 ,2012), Hokkaido University (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[149]<\/span><\/strong>H.Teramoto
Analysis of dynamical systems with large degrees of freedom in terms of hyperbolic invariant manifolds and their breakdown<\/strong><\/dt>
International symposium on anomalous statistics, generalized entropies, and information geometry NEXT2012Nara, Memorial Hall (3.7 ,2012), Nara Women's University (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[148]<\/span><\/strong>Chun-Biu Li
An information theoretic approach to dynamical irreversibility from time series<\/strong><\/dt>
Dynamics of complex systems(3.7 ,2012), Hokkaido University (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[147]<\/span><\/strong>Tamiki Komatsuzaki
The dynamical origin of reactions: why and how does a system change its state?<\/strong><\/dt>
Dynamics of complex systems(3.7 ,2012), Hokkaido University (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[146]<\/span><\/strong>Shinnosuke Kawai
Dynamics of Molecules Analyzed by the Generalized Langevin Equation<\/strong><\/dt>
Dynamics of complex systems(3.8 ,2012), Hokkaido University (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[145]<\/span><\/strong>Naoki Miyagawa
Many-body Correlation in Pattern Formation and its Decomposability<\/strong><\/dt>
Quantitative Developmental Biology(3.26 ,2012), RIKEN Center for Developmental Biology (CDB) (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[144]<\/span><\/strong>Chun-Biu Li
Data-Driven Modeling of the Complex Kinetics and Dynamics from Single Protein Motor Rotation Experiments<\/strong><\/dt>
Quantitative Developmental Biology(3.26 ,2012), RIKEN Center for Developmental Biology (CDB) (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[143]<\/span><\/strong>Tamiki Komatsuzaki
Theories Should Meet Experiments: Let the system speak for itself!<\/strong><\/dt>
Max Planck Institute Seminar(4.24 ,2012), Stuttgart (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[142]<\/span><\/strong>Tamiki Komatsuzaki
Theories Should Meet Experiments: What Can We Extract from Time Series Data?\"<\/strong><\/dt>
Telluride Summer Workshop 'Characterizing Landscapes: From Biomolecules to Cellular Networks'(6.11-6.15 ,2012) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[141]<\/span><\/strong>Tamiki Komatsuzaki
Transition States and Reaction Coordinates in Complex Systems\"<\/strong><\/dt>
Telluride Summer Workshop 'Searching for Reaction Coordinates and Order Parameters'(6.17-6.21 ,2012) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[140]<\/span><\/strong>Kawai, S., Mootz, H.D., Yang, H., Komatsuzaki, T.
Constructing unbiased estimators for arbitrary probability distribution<\/strong><\/dt>
12th Annual Awardees Meeting(7.1-7.4 ,2012), Daegu (Korea) (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[139]<\/span><\/strong>Tamiki Komatsuzaki
Theories should meet measurements: What can we extract from data?<\/strong><\/dt>
Paradigm Innovation in Biology: novel strategy and thinking(10.16-10.19 ,2012), Academia Sinica, Taipei (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[138]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
Construction of \"Optimal\" Estimators for Arbitrary Probability Distributions<\/strong><\/dt>
Paradigm Innovation in Biology: novel strategy and thinking(10.16-10.19 ,2012), Academia Sinica, Taipei (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[137]<\/span><\/strong>Tamiki Komatsuzaki
Phase space geometry in chemical reaction dynamics: revisiting the concept of reaction coordinate<\/strong><\/dt>
(10.19 ,2012), Department of Chemistry, National Chiao Tung University, HsinChu, Taiwan (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[136]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
Finding Essential Coordinate to Disentangle the Reaction Dynamics of High Dimension<\/strong><\/dt>
(10.19 ,2012), Informal seminar in Department of Chemistry, National Chiao Tung University, HsinChu, Taiwan (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[135]<\/span><\/strong>Tamiki Komatsuzaki
Toward deciphering reality of molecular dynamics in systems biology<\/strong><\/dt>
RIES - CIS Joint Symposium(10.25 ,2012), Sapporo (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[134]<\/span><\/strong>Tamiki Komatsuzaki
Deciphering complex hierarchical living systems in single molecule biology<\/strong><\/dt>
2nd Discussion Symposium on Artificial Life and Biomimetic Functional Materials(12.11 ,2012), Sapporo (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[133]<\/span><\/strong>Shinnosuke Kawai, Hiroshi Teramoto, Tamiki Komatsuzaki
Effect of Time Scales on the Essential Dimensionality of a Dynamical System<\/strong><\/dt>
The 13th RIES-Hokudai International Symposium (12.13-12.14 ,2012), Chateraise Gateaux Kingdom, Sapporo, Japan (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[132]<\/span><\/strong>Preetom Nag, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Extracting quasi-normally repelling material surface by re-formulating variational Lagrangian coherent structure(LCS) theory<\/strong><\/dt>
The 13th RIES-Hokudai International Symposium (12.13-12.14 ,2012), Chateraise Gateaux Kingdom, Sapporo, Japan (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

2011<\/h3>
[131]<\/span><\/strong>T. Komatsuzaki
Chance and necessity in reactions under thermal fluctuation<\/strong><\/dt>
James Franck Institute Seminar(2.15 ,2011), The University of Chicago (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[130]<\/span><\/strong>T. Komatsuzaki
Mining State Space Network from Single-Molecule Time Series<\/strong><\/dt>
Telluride Workshop on Complexity of Kinetics and Dynamics in Many Dimension(6.20-6.24 ,2011) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[129]<\/span><\/strong>CB Li
Either contruction of KS from dwell-time time series, or modeling of QD blinking<\/strong><\/dt>
Telluride Workshop on Complexity of Kinetics and Dynamics in Many Dimension(6.20-6.24 ,2011) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[128]<\/span><\/strong>S Kawai, H.Tetemoto, T.Komatsuzaki
Reaction dynamics of complex systems analyzed by Langevin type framework<\/strong><\/dt>
Telluride Workshop on Complexity of Kinetics and Dynamics in Many Dimension(6.20-6.24 ,2011) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[127]<\/span><\/strong>T. Komatsuzaki
\"Digging\" single molecule time series to \"mine\" the underlying effective energy landscape<\/strong><\/dt>
Telluride Workshop on Single Molecule Dynamics(6.27-7.1 ,2011) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[126]<\/span><\/strong>CB Li
Multiscale Time Series Analysis of Supermolecular Motor Proteins on the Single Molecule Level<\/strong><\/dt>
Telluride Workshop on Single Molecule Dynamics(6.27-7.1 ,2011) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[125]<\/span><\/strong>T. Komatsuzaki
How can we \"mine\" effective energy landscapes of proteins from single molecule time series in the violation of local equilibrium and detailed balance?<\/strong><\/dt>
Telluride Workshop on Exploring energy landscapes, from single molecules to mesoscopic models(7.25-8.5 ,2011) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[124]<\/span><\/strong>T. Komatsuzaki
\"Mining\" an effective Energy landscape of a protein from single molecule time series<\/strong><\/dt>
Telluride Workshop on Protein Dynamics(8.1-8.5 ,2011) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[123]<\/span><\/strong>S. Kawai, H. Teramoto, T. Komatsuzaki
Low-dimensional Description of Complex Many-Body Molecular Systems by Extracting Important Dynamical Modes<\/strong><\/dt>
14th Asian Chemical Congress(9.8 ,2011), The Queen Sirikit National Convention Center, Bangkok (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[122]<\/span><\/strong>T. Komatsuzaki
Mining the underlying free energy landscapes of biomolecules from single molecule time series<\/strong><\/dt>
(9.16 ,2011), Department of Biology, Muenster University (Germany)<\/dd>
<\/div><\/div>

<\/p>\n\n

[121]<\/span><\/strong>Naoki Miyagawa, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Spatial Heterogeneity of Multivariate Dependence<\/strong><\/dt>
International Conference of Numerical Analysis and Applied Mathematics(9.19-9.25 ,2011), Greece (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[120]<\/span><\/strong>Tahmina Sultana, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Extracting the reaction network buried in Single Molecule Time Series of Epidermal Growth Factor Receptor and Growth Factor Receptor-Bound Protein 2<\/strong><\/dt>
12th RIES-Hokudai International Symposium (11.21-11.22 ,2011), Chateraise Gateaux Kingdom Sapporo (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[119]<\/span><\/strong>, Chun Biu Li, Tamiki Komatsuzaki
\"EXTRACTING THE MOST UNBLIASED KINETIC SCHEME FROM SINGLE MOLECULE TIME\" \"Bio-inspired approaches:Micro- & Nano- Architectures, Materials & Imaging\"<\/strong><\/dt>
FRANCE-JAPAN WORKSHOP(10.11-10.12 ,2011), Institut Europeen de Chimie et Biologie - Bordeaux (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[118]<\/span><\/strong>T. Komatsuzaki
Mining an effective Energy landscape of a protein from single molecule time series<\/strong><\/dt>
17th International Biophysics Congress(10.30-11.3 ,2011) (oral) <\/dd>
<\/div><\/div>

<\/p>\n\n

[117]<\/span><\/strong>Chun-Biu Li, Tamiki Komatsuzaki
Data-driven modeling of the complex dynamics and kinetics of single motor protein<\/strong><\/dt>
17th International Biophysics Congress(10.30-11.3 ,2011) (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[116]<\/span><\/strong>Yutaka Nagahata, Shinnosuke Kawai, Hiroshi Teramoto, Chun-Biu Li, Tamiki Komatsuzaki
Deterministic properties of a saddle with two reactive degrees-of-freedoms<\/strong><\/dt>
12th RIES-Hokudai International Symposium (11.21-11.22 ,2011), Chateraise Gateaux Kingdom Sapporo (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[115]<\/span><\/strong>Naoki Miyagawa, Hiroshi Teramoto, Chun Biu Li, Tamiki Komatsuzaki
Extracting many-body interaction laws from an observation<\/strong><\/dt>
12th RIES-Hokudai International Symposium (11.21-11.22 ,2011), Chateraise Gateaux Kingdom Sapporo (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

2010<\/h3>
[114]<\/span><\/strong>S. Kawai, T. Komatsuzaki
Time-dependent quantum normal form and control of chemical reactions<\/strong><\/dt>
International Symposium on Molecular Theory for Real Systems(1 ,2010), Kyoto (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[113]<\/span><\/strong>S. Kawai, T. Komatsuzaki
Nonlinear dynamics of chemical reactions in thermal fluctuating environments<\/strong><\/dt>
International Symposium on Molecular Theory for Real Systems(1 ,2010), Fukui Institute for Fundamental Chemistry, Kyoto University (contributed poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[112]<\/span><\/strong>Tamiki Komatsuzaki, Chun-Biu Li, Akinori Baba
Extracting Complex Network and Effective Free Energy Landscape of Protein Fluctuation From Single Molecule Time Series<\/strong><\/dt>
Biophysical Society 54th Annual Meeting(2.10-2.24 ,2010), San Francisco,Calofornia, 20-24 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[111]<\/span><\/strong>T. Komatsuzaki
Extracting a Multidimensional Free Energy Landscape from a Scalar Single-Molecule Time Series<\/strong><\/dt>
International Symposium on Joint Research Network on Advanced Materials and Devices 'Chou'(3 ,2010), Tomakomai, Hokkaido (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[110]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
Multidimensional Energy Landscapes in Single MoleculeBiophysics<\/strong><\/dt>
International Symposium on Joint Research Network on Advanced Materials and Devices 'Chou'(3 ,2010), Tomakomai, Hokkaido (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[109]<\/span><\/strong>Chun Biu Li, Haw Yang, Tamiki Komatsuzaki
Extracting and Quantifying the Multiscale Complex Networks Constructed from Single-Molecule Time Series<\/strong><\/dt>
International Symposium on Joint Research Network on Advanced Materials and Devices 'Chou'(3 ,2010), Tomakomai, Hokkaido (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[108]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
Roles of water molecules for structural transitions of solute\u3000molecules<\/strong><\/dt>
International Symposium on Joint Research Network for Advanced\u3000Material and Devices 'Chou'(3 ,2010), Tomakomai, Hokkaido (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[107]<\/span><\/strong>Tamiki Komatsuzaki
Energy Landscapes for Single-Molecules<\/strong><\/dt>
Telluride Summer Workshop 'Characterizing Landscapes: From Biomolecules to Cellular Networks'(6.14-6.18 ,2010) (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[106]<\/span><\/strong>Tamiki Komatsuzaki
The dynamic origin of reactions under thermal fluctuation: true reaction coordinate<\/strong><\/dt>
Telluride Summer Workshop'Searching for Reaction Coordinates and Order Parameters'(6.21-6.25 ,2010) (invited)
organized by Ron Elber<\/dd>
<\/div><\/div>

<\/p>\n\n

[105]<\/span><\/strong>Tamiki Komatsuzaki
Extracting the Underlying Energy Landscape from a Single-Molecule Time Series<\/strong><\/dt>
Gordon Conference on Single Molecule Approaches to Biology(6.27-7.2 ,2010), Italy (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[104]<\/span><\/strong>Tamiki Komatsuzaki, Chun Biu Li, Shinnosuke Kawai
Robustness and diversity of transitions in a sea of chaos and stochastic fluctuation<\/strong><\/dt>
International Conference of Numerical Analysis and Applied Mathematics(9.19-9.25 ,2010), Greece (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

2009<\/h3>
[103]<\/span><\/strong>Tamiki Komatsuzaki
Extracting Multiscale Complex Network of Protein Fluctuation from Single-Molecule Time Series<\/strong><\/dt>
Single Molecule Biophysics Winter Workshop 2009(1.4-1.10 ,2009), Aspen Center for Physics, CO USA (contributed talk and poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[102]<\/span><\/strong>K. Sei, C. Li, T. Nomura, H. Tatsumi, T. Komatsuzaki
Data-driven time series analysis of Mechanosensitive ion channel gating dynamics<\/strong><\/dt>
6th Asian Biophysics Association (ABA) Symposium & 27th Hong Kong Society of Neuroscience Annual Meeting(1 ,2009), Hong Kong, China (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[101]<\/span><\/strong>C. Li
Complex multi-scale networks of protein fluctuation dynamics from single-molecule time series<\/strong><\/dt>
6th Asian Biophysics Association (ABA) Symposium & 27th Hong Kong Society of Neuroscience Annual Meeting(1 ,2009), Hong Kong, China<\/dd>
<\/div><\/div>

<\/p>\n\n

[100]<\/span><\/strong>Chun Biu Li
Multiscale Networks of Interacting Biological Systems: From network constructions to causality among them<\/strong><\/dt>
Sapporo Winter School(2.10-2.14 ,2009), Hokkaido University (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[99]<\/span><\/strong>Hiroshi Teramoto
Folding patterns of stable\/unstable manifolds in high dimensional dynamical systems<\/strong><\/dt>
Sapporo Winter School(2.10-2.14 ,2009), Hokkaido University (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[98]<\/span><\/strong>Tamiki Komatsuzaki
Chance and Necessity in Changes of States<\/strong><\/dt>
Department of Physics seminar(2.23 ,2009), ENS de Lyon, Lyon, France (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[97]<\/span><\/strong>Tamiki Komatsuzaki
Exploring remnants of invariants buried in a deep potential well in chemical reactions<\/strong><\/dt>
Focus Session: The Transition State in Physics, Chemistry, and Astrophysics,APS Meeting(3.16-3.20 ,2009), Pittsburgh, Pennsylvania (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[96]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
Construction of an Effective Free Energy Landscape from Single-Molecule Time Series<\/strong><\/dt>
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[95]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
Determinism and fluctuation in condensed phase chemical reactions<\/strong><\/dt>
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[94]<\/span><\/strong>Kazuto Sei, Chun Biu Li, Tamiki Komatsuzaki
Time series analysis of mechanosensetive ion channel dynamics<\/strong><\/dt>
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[93]<\/span><\/strong>Chun Biu Li, Mikito Toda, Tamiki Komatsuzaki
Does No-return Transition State always exist above the Reaction Threshold?<\/strong><\/dt>
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[92]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
Free energy landscape from single molecule time series of biomolecules<\/strong><\/dt>
International Symposium on Reaction Dynamics of Many-Body Chemical systems(6.22-6.24 ,2009), Kyoto Univ. (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[91]<\/span><\/strong>Tamiki Komatsuzaki
Multiscale Complex Network and Effective Free Energy Landscape extracted from Single-Molecule Time Series<\/strong><\/dt>
Telluride Workshop on Single Molecule Dynamics(6.22-6.26 ,2009), Telluride, CO USA (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[90]<\/span><\/strong>Tamiki Komatsuzaki
Free Energy Landscape for Single Molecule<\/strong><\/dt>
Telluride Workshop on The Complexity of Dynamics and Kinetics in ManyDimensions(6.29-7.3 ,2009), Telluride, CO USA (organizer's talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[89]<\/span><\/strong>Chun Biu Li
Data-driven Multiscale Modeling of Single Molecule Experiments from Time Series Analysis<\/strong><\/dt>
International Symposium 'Innovative Nanoscience of Supermolecular Motor Proteins'(9.8-9.10 ,2009), Kyoto (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[88]<\/span><\/strong>Mesfin Asfaw, Wokyung Sung
Stochastic resonance of flexible Polymer<\/strong><\/dt>
International Symposium 'Innovative Nanoscience of Supermolecular Motor Proteins'(9.8-9.10 ,2009), Kyoto (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[87]<\/span><\/strong>Tamiki Komatsuzaki
Dynamical Origin of Change of States in Chemical Reactions and Conformation Changes--Toward Biological Functions under Thermal Fluctuation<\/strong><\/dt>
RIES-CIS Mini-workshop on Nano\/Bio\/Quantum Science(12.10 ,2009), National Chiao Tung University, Taiwan (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

2008<\/h3>
[86]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
Effective energy landscape from single molecule time series<\/strong><\/dt>
the 9th RIES-Hokudai International Symposium, Creative Research Initiative 'Sousei'(1.27 ,2008), Sapporo (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[85]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
A method to extract intermittent regular and chaotic behavior and their local properties from 1-dimensional time series<\/strong><\/dt>
the 9th RIES-Hokudai International Symposium, Creative Research Initiative (1.27 ,2008), Sapporo (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[84]<\/span><\/strong>Tamiki Komatsuzaki
Construction of an Effective Free Energy Landscape from Single-Molecule Time Series<\/strong><\/dt>
1st Annual Protein and Peptide Conference, BIT's 4th Life Spring Forum on protein folding and diseases -celebrating 60 years of Prof. Scheraga's science (1948-2008)(4.22-4.24 ,2008), Shenzhen (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[83]<\/span><\/strong>Li Chun Biu, Tamiki Komatsuzaki
Capturing the Multiple-Time-Scale Dynamical State-Space-Network in the Time Series of Single Molecule Experiment<\/strong><\/dt>
1st Annual Protein and Peptide Conference(4.22-4.24 ,2008), Shenzhen (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[82]<\/span><\/strong>Hiroshi Teramoto
Several properties of entanglement and intersection between stable and unstable manifold emanating from normally hyperbolic invariant manifold<\/strong><\/dt>
Kyoto Dynamics Days 7 'Hamiltonian Systems and Related Topics'(6.26-6.28 ,2008), Kyoto (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[81]<\/span><\/strong>Tamiki Komatsuzaki
Extracting Multiscale Complex Network of Protein Fluctuation from Single-Molecule Time Series<\/strong><\/dt>
Telluride Summer Workshop 'Characterizing Landscapes: From Biomolecules to Cellular Networks'(7.6-7.12 ,2008) (invited)
organized by Jianpeng Ma and Jin Wang<\/dd>
<\/div><\/div>

<\/p>\n\n

[80]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
Toward Understanding of Dynamical Origin of Mode-Selectivity in Complex Systems<\/strong><\/dt>
The 2nd International Symposium on Molecular Theory for Real Systems(8.4-8.6 ,2008), IMS, Okazaki (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[79]<\/span><\/strong>S. Kawai, T. Komatsuzaki
Reaction dynamics in condensed phase - Determinacy of the reaction in a noisy environment-<\/strong><\/dt>
STEREODYNAMICS 2008(10.13-10.18 ,2008), China (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[78]<\/span><\/strong>S. Kawai, C.-B. Li, T. Komatsuzaki, T. Yamashita, Y. Fujimura, M. Toda
Dimension reduction for the analyses of reaction dynamics of O(1D)+N2O -> NO+NO<\/strong><\/dt>
STEREODYNAMICS 2008(10.13-10.18 ,2008), China (hot topic talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[77]<\/span><\/strong>Chun Biu Li
On the search of new mathematical frameworks to unveil the multiscale dynamics of complex systems<\/strong><\/dt>
Workshop on Interfacial dynamics on the boundaries of physics, chemistry, biology and mathematics(11.20 ,2008), Hokkaido (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[76]<\/span><\/strong>Hiroshi Teramoto
Folding patterns of stable\/unstable manifolds in multi-dimensional systems<\/strong><\/dt>
Workshop on Interfacial dynamics on the boundaries of physics, chemistry, biology and mathematics(11.20 ,2008), Hokkaido (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[75]<\/span><\/strong>Tamiki Komatsuzaki
Multiscale Complex Network and Effective Free Energy Landscape Extracted from Single-Molecule Time Series<\/strong><\/dt>
Symposium on Linking single molecule spectroscopy and energy landscape perspectives(12.3-12.5 ,2008), Fukuoka (organizer's talk)
organized by Tamiki Komatsuzaki\uff08Hokkaido University, Japan\uff09 Haw Yang (Lawrence Berkeley National Laboratory, USA) at 46th Annual Meeting of the Biophysical Society of Japan\n<\/dd>
<\/div><\/div>

<\/p>\n\n

[74]<\/span><\/strong>Tamiki Komatsuzaki
What can we learn about the mechanism of complexity in kinetics and dynamics from scalar time series?<\/strong><\/dt>
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (organizer's talk)
organized by Satoshi Takahashi (Osaka Univ., Japan), Masaru Kawakami (JAIST, Japan), Tamiki Komatsuzaki\uff08Hokkaido Univ., Japan\uff09\n<\/dd>
<\/div><\/div>

<\/p>\n\n

[73]<\/span><\/strong>Chun Biu Li
Data-driven Modeling of Single Mechanosensitive Ion Channels from Time Series Analysis<\/strong><\/dt>
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[72]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
Multidimensional energy landscape from single molecule time series<\/strong><\/dt>
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (poster, poster award) <\/dd>
<\/div><\/div>

<\/p>\n\n

[71]<\/span><\/strong>Kazuya Fujimoto, Masahito Kinoshita, Kiyoto Kamagata, Yuji Goto, Yoshihiro Sambongi, Akinori Baba, Tamiki Komatsuzaki, Satoshi Takahashi
Denatured state dynamics of cytochrome c551 observed by single molecule fluorescence intensity measurements<\/strong><\/dt>
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (poster, poster award) <\/dd>
<\/div><\/div>

<\/p>\n\n

[70]<\/span><\/strong>Kazuto Sei, Li Chun Biu, Tamiki Komatsuzaki
Toward the understanding of the gating dynamics for the mechanosensitive ion channel<\/strong><\/dt>
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[69]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
Elucidation of mode-selectivity of biomolecule<\/strong><\/dt>
Institute for Protein Research Seminar on New Approaches to Complexity of Protein Dynamics by Single Molecule Measurements: Experiments and Theories(12.7-12.9 ,2008), Osaka (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[68]<\/span><\/strong>S. Kawai, T. Komatsuzaki
Determinism and Fluctuation of Chemical Reactions under Noisy Environment<\/strong><\/dt>
The 10th RIES-Hokudai International Symposium on(12.8 ,2008), Sapporo (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

2007<\/h3>
[67]<\/span><\/strong>Tamiki Komatsuzaki
Dynamical Hierarchy of Transitions in Chemical Reactions<\/strong><\/dt>
DYNAMICS OF COMPLEX SYSTEMS \u3000- mathematical modeling, method and prediction -(on the celebration of 60th birthday of Profs. Y. Pesin and Y. Takahashi)(3.19-3.20 ,2007), Hokkaido University, Hokkaido, Japan (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[66]<\/span><\/strong>Chun Biu Li
Detection of Phase Space Geometrical Structure Buried in Time Series<\/strong><\/dt>
DYNAMICS OF COMPLEX SYSTEMS \u3000- mathematical modeling, method and prediction -(on the celebration of 60th birthday of Profs. Y. Pesin and Y. Takahashi)(3.19-3.20 ,2007), Hokkaido University, Hokkaido, Japan (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[65]<\/span><\/strong>Tamiki Komatsuzaki
Multiple-Time-Scale State Network Topography buried in Single Molecule Time Series<\/strong><\/dt>
Energy Landscapes: Negotiating the Black Diamonds(4.2-4.6 ,2007), Telluride, CO, USA, 2-6 (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[64]<\/span><\/strong>Akinori Baba
How can One Extract Free Energy Landscapes from Single Molecule Time Series?<\/strong><\/dt>
Energy Landscapes: Negotiating the Black Diamonds(4.2-4.6 ,2007), Telluride, CO, USA (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[63]<\/span><\/strong>Akira Shojiguchi, Chun-Biu Li, Tamiki Komatsuzaki, Mikito Toda
Fractional behavior in Hamiltonian Chaos Describing Reactions<\/strong><\/dt>
THE THIRD SHANGHAI INTERNATIONAL SYMPOSIUM ON NONLINEAR SCIENCES AND APPLICATIONS(6.6-6.11 ,2007), Shanghai, China (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[62]<\/span><\/strong>Chun Biu Li, Akira Shojiguchi, Mikito Toda, Tamiki Komatsuzaki
The Dynamical Origin of Chemical Reactions: How and Why Systems can React from One State to the Other<\/strong><\/dt>
THE THIRD SHANGHAI INTERNATIONAL SYMPOSIUM ON NONLINEAR SCIENCES AND APPLICATIONS(6.6-6.11 ,2007), Shanghai, China (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[61]<\/span><\/strong>Chun-Biu Li, Tamiki Komatsuzaki
Extracting Protein Conformational Dynamics on a Photon-by-Photon Basis in Single Molecule Experiments<\/strong><\/dt>
THE THIRD SHANGHAI INTERNATIONAL SYMPOSIUM ON NONLINEAR SCIENCES AND APPLICATIONS(6.6-6.11 ,2007), Shanghai, China (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[60]<\/span><\/strong>Yasuhiro Matsunaga, Chun-Biu Li, Tamiki Komatsuzaki
Anomalous Diffusion in Folding Dynamics of Minimalist Protein Landscape<\/strong><\/dt>
THE THIRD SHANGHAI INTERNATIONAL SYMPOSIUM ON NONLINEAR SCIENCES AND APPLICATIONS(6.6-6.11 ,2007), Shanghai, China (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[59]<\/span><\/strong>Kazuto Sei, Tamiki Komatsuzaki
Complex network extracted from single molecule time series: Dynamical structure in Kantorovich metric space<\/strong><\/dt>
International Symposium on Molecular Theory for Real Systems(7.27-7.29 ,2007), Katsura, Kyoto (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[58]<\/span><\/strong>Li Chun Biu, Tamiki Komatsuzaki
Capturing the multiple-time-scale dynamical state-network in the time series of single molecule experiments<\/strong><\/dt>
ACS National Meeting: Single Molecule Spectroscopy, Imaging and Manipulation of Biomolecular Systems(8.19-8.23 ,2007), Boston (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[57]<\/span><\/strong>Tamiki Komatsuzaki
Dynamical Hierarchy of Transitions in Chemical Reactions<\/strong><\/dt>
Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions(8.13-8.24 ,2007), CO, USA (organizer's contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[56]<\/span><\/strong>Tamiki Komatsuzaki
Multiple-Time-Scale State Space Landscape buried in Single Molecule Time Series<\/strong><\/dt>
Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions(8.13-8.24 ,2007), CO, USA (organizer's contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[55]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
Geometrical structure under bond selective chemistry<\/strong><\/dt>
Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions(8.13-8.24 ,2007), CO, USA, 13-24 (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[54]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
The relation between the stable manifold stretched from NHIM and remnant structures<\/strong><\/dt>
Telluride Workshop, The Complexity of Dynamics and Kinetics in Many Dimensions(8.13-8.24 ,2007), CO, USA (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[53]<\/span><\/strong>Tamiki Komatsuzaki
What will we \"talk with\" nature?<\/strong><\/dt>
The Complexity of Kinetics and Dynamics in Many Degrees of Freedom Systems(10.22-10.23 ,2007), Hokkaido (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

2006<\/h3>
[52]<\/span><\/strong>Tamiki Komatsuzaki
Water Field Dynamics in the Vicinity of Proteins<\/strong><\/dt>
Center for Integrative Multiscale Modeling and Simulation Seminar(8.22 ,2006), California Institute of Technology, Pasadena, California USA<\/dd>
<\/div><\/div>

<\/p>\n\n

[51]<\/span><\/strong>Tamiki Komatsuzaki
A construction of the underlying free energy landscape from single molecule time series<\/strong><\/dt>
Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan(11.12-11.16 ,2006), Okinawa (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[50]<\/span><\/strong>Chun Biu Li, Tamiki Komatsuzaki
Extracting Dynamics from Time Series Data of Single Molecule Experiments on a Photon-by-Photon Basis<\/strong><\/dt>
Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan(11.12-11.16 ,2006), Okinawa<\/dd>
<\/div><\/div>

<\/p>\n\n

[49]<\/span><\/strong>Kazuto Sei, Tamiki Komatsuzaki
Randomness and Memory in Single Molecule Time Series<\/strong><\/dt>
Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan(11.12-11.16 ,2006), Okinawa<\/dd>
<\/div><\/div>

<\/p>\n\n

[48]<\/span><\/strong>Sachiko Sato, Akinori Baba, Tamiki Komatsuzaki
A Discrete Wavelet Time Series Analysis: The Hierarchy of Dynamics of Biomolecules<\/strong><\/dt>
Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan (11.12-11.16 ,2006), Okinawa<\/dd>
<\/div><\/div>

<\/p>\n\n

[47]<\/span><\/strong>Tamiki Komatsuzaki
What can one learn about the underlying free energy landscape or dynamical structure from single molecule time series?<\/strong><\/dt>
Discussion on 'Theory and simulation of biomolecular nano-machines'(12.12-12.16 ,2006), Maiko Villa, Kobe, 12-16 (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[46]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
A Local ergodic state analysis of single molecule time series<\/strong><\/dt>
Discussion on \"Theory and simulation of biomolecular nano-machines\"(12.12-12.16 ,2006), Maiko Villa, Kobe (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[45]<\/span><\/strong>Chun Biu Li, Tamiki Komatsuzaki
Extracting Protein Conformational Dynamics on a Photon-by-Photon Basis in Single Molecule Electron Transfer<\/strong><\/dt>
Discussion on \"Theory and simulation of biomolecular nano-machines\"(12.12-12.16 ,2006), Maiko Villa, Kobe (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[44]<\/span><\/strong>Satoshi Noda, Akinori Baba, Tamiki Komatsuzaki
A Persistence of Long-Time Memory in Coarse-Grained Site-Velocity Field of Liquid Water<\/strong><\/dt>
Discussion on \"Theory and simulation of biomolecular nano-machines\"(12.12-12.16 ,2006), Maiko Villa, Kobe (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

2005<\/h3>
[43]<\/span><\/strong>Chun Biu Li, Yasuhiro Matsunaga, Mikito Toda, Tamiki Komatsuzaki
Geometrical Structure of Phase Space for Chemical Reaction Dynamics: What Kinds of Molecular Motions are Associated with Phase Space Modes in Chaos?<\/strong><\/dt>
International Symposium on Atoms, Molecules, and Clusters in Intense Laser Fields 2 (1.24-1.25 ,2005), Tokyo (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[42]<\/span><\/strong>Tamiki Komatsuzaki
Dynamical Hierarchy of Transitions in Chemical Reactions and Protein Dynamics<\/strong><\/dt>
Center for Integrative Multiscale Modeling and Simulation Seminar(7.21 ,2005), California Institute of Technology, Pasadena, California USA (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[41]<\/span><\/strong>Tamiki Komatsuzaki
Complexity of Dynamics on Multidimensional Energy Landscapes in Chemical reactions & Proteins<\/strong><\/dt>
Telluride Summer Workshop \"Energy Landscapes: Dynamics and Optimization\"(7.24-8.6 ,2005), Telluride, Colorado USA (invited talk)
organized by David J. Wales(Univ. of Cambridge),Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz)\n<\/dd>
<\/div><\/div>

<\/p>\n\n

[40]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
A construction of multidimensional free energy landscape from an ensemble of single molecule time series of biomolecules<\/strong><\/dt>
Telluride Summer Workshop \"Energy Landscapes: Dynamics and Optimization\"(7.24-8.6 ,2005), Telluride, Colorado USA (contributed talk)
organized by David J. Wales(Univ. of Cambridge),Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz), \n<\/dd>
<\/div><\/div>

<\/p>\n\n

[39]<\/span><\/strong>Yasuhiro Matsunaga, Chun Biu Li, Tamiki Komatsuzaki
Time series analysis of collective motions in proteins<\/strong><\/dt>
Telluride Summer Workshop \"Energy Landscapes: Dynamics and Optimization\"(7.24-8.6 ,2005), Telluride, Colorado USA (contributed talk)
organized by David J. Wales(Univ. of Cambridge),Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz), \n<\/dd>
<\/div><\/div>

<\/p>\n\n

[38]<\/span><\/strong>Chun Biu Li, Mikito Toda, Tamiki Komatsuzaki
Origin of Stochastic Transition on Multi-dimensional Energy Landscape<\/strong><\/dt>
Telluride Summer Workshop \"Energy Landscapes: Dynamics and Optimization\"(7.24-8.6 ,2005), Telluride, Colorado USA (contributed talk)
organized by David J. Wales(Univ. of Cambridge),Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz), \n<\/dd>
<\/div><\/div>

<\/p>\n\n

[37]<\/span><\/strong>Chun Biu Li, Mikito Toda, Tamiki Komatsuzaki
Vibrational energy redistribution via geometrical structures in the multi-dimensional phase space of chemical reaction<\/strong><\/dt>
Telluride Summer Workshop \"Condensed Phase and Gas Phase Vibrational Dynamics\"( ,2005), Telluride, Colorado USA 8<\/strong>, 6-13 (contributed talk)
organized by David M. Leitner (Univ. of Nevada) and Peter Hamm (University of Zurich), \n<\/dd>
<\/div><\/div>

<\/p>\n\n

[36]<\/span><\/strong>Tamiki Komatsuzaki
How does single molecule time series tell us about the underlying multidimensional free energy and state space landscapes?<\/strong><\/dt>
Telluride Summer Workshop \"Single Molecule Measurements: Theory and Experiment\"(8.6-8.13 ,2005), Telluride, Colorado USA (contributed talk)
organized by Jianshu Cao (MIT), \n<\/dd>
<\/div><\/div>

<\/p>\n\n

[35]<\/span><\/strong>Tamiki Komatsuzaki
Dynamical Hierarchy in Transitions of Chemical Reactions: Definability of No-return Transition State<\/strong><\/dt>
Workshop on \"Critical stability of few-body quantum systems\", the Max-Planck-Institut fur Physik Komplexer Systeme(10.16-10.22 ,2005), Dresden, Germany (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[34]<\/span><\/strong>Chun Biu Li, Tamiki Komatsuzaki
Dynamical Hierarchy in Transitions of Chemical Reactions<\/strong><\/dt>
International Symposium on Ultrafast Intense Laser Science 4(12.10-12.14 ,2005), Big Island, Hawaii<\/dd>
<\/div><\/div>

<\/p>\n\n

[33]<\/span><\/strong>Chun Biu Li, Yasuhiro Matsunaga, Mikito Toda, Tamiki Komatsuzaki
Geometrical structure of the multidimensional phase space transport in chemical reactions<\/strong><\/dt>
Pacifichem 2005(12.15-12.20 ,2005), Honolulu, Hawaii<\/dd>
<\/div><\/div>

<\/p>\n\n

[32]<\/span><\/strong>Satoshi Noda, Akinori Baba, Tamiki Komatsuzaki
How does a polypeptide give rise to the helix-coil transition with interacting the surrounding water field?<\/strong><\/dt>
Pacifichem 2005(12.15-12.20 ,2005), Honolulu, Hawaii<\/dd>
<\/div><\/div>

<\/p>\n\n

2004<\/h3>
[31]<\/span><\/strong>Tamiki Komatsuzaki
What can a Single Molecule Time Series Data Tell Us? -Regularity in Structural Transitions on MultiBasin Energy Landscapes of Proteins-<\/strong><\/dt>
Asian Symposium on Intense Laser Science (ASILS)(6.18-6.19 ,2004), Tokyo (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[30]<\/span><\/strong>Tamiki Komatsuzaki
Regularity in Chaotic Transitions on Multi-Basin Energy Landscapes<\/strong><\/dt>
CECAM Workshop on Energy Localization: From Small Polyatomic Molecules to Large Biomolecules(9.6-9.8 ,2004), Lyon, France (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[29]<\/span><\/strong>Tamiki Komatsuzaki
How can We Extract Dynamical Information from Time Series Data ?<\/strong><\/dt>
Japan-U.S. workshop on Dynamical Foundation of Functions and Energy Transfer in Protein Systems(11.1-11.6 ,2004), Chicago, US, 1-6<\/dd>
<\/div><\/div>

<\/p>\n\n

[28]<\/span><\/strong>Chun Biu Li
Multi-dimensional reaction dynamics in chaotic chemical process<\/strong><\/dt>
Workshop on \"Chaos and Nonlinear Dynamics in Quantum-Mechanical and Macroscopic Systems\" (12.8-12.10 ,2004), Kyoto (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

2003<\/h3>
[27]<\/span><\/strong>
<\/strong><\/dt>
The 2nd Asian Joint Workshop for Protein Informatics(2.27-2.28 ,2003), Osaka, Japan (participant) <\/dd>
<\/div><\/div>

<\/p>\n\n

[26]<\/span><\/strong>Yasuhiro Matsunaga, Konstantin S. Kostov, Tamiki Komatsuzaki
Protein Folding Dynamics -Abnormal Diffusion and Hierarchical Regularity<\/strong><\/dt>
The 30th NIPS International Symposium on \"Frontiers of Biological Electron Microscopy - Proteins to Supramolecules\"(3.12-3.15 ,2003), Okazaki(Japan) (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[25]<\/span><\/strong>Kyoko Hoshino, Yasuhiro Matsunaga, Nobuyasu Koga, Shoji Takada, Tamiki Komatsuzaki
Non-stationarity and Non-Markovianity of Foldings in Small Proteins<\/strong><\/dt>
The 30th NIPS International Symposium on \"Frontiers of Biological Electron Microscopy - Proteins to Supramolecules\" (3.12-3.15 ,2003), Okazaki(Japan) (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[24]<\/span><\/strong>Tamiki Komatsuzaki
Hierarchical Regularities Buried in a Sea of Chaos: Chemical Reactions and Protein Foldings<\/strong><\/dt>
The Workshop on Reaction Theory and Chaos(3.18-3.19 ,2003), Nara, Japan (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[23]<\/span><\/strong>Tamiki Komatsuzaki
Regularity at Coarse Grained Scale of Protein Folding Dynamics & Reductionality of Dimensions to Capture Protein Folding Landscapes<\/strong><\/dt>
Telluride Summer Workshop \u2019Energy Landscapes: Structure, Dynamics and Optimization Algorithms\u2019(7.20-8.3 ,2003), Telluride, Colorado USA, 20 (contributed talk)
organized by Christian Shoen (MPI) and Karl H. Hoffmann (TU Chemnitz),\n<\/dd>
<\/div><\/div>

<\/p>\n\n

[22]<\/span><\/strong>Yasuhiro Matsunaga, Konstantin S. Kostov, Tamiki Komatsuzaki
Multi-Basin Dynamics in Off-Lattice Minimalist Protein Landscapes<\/strong><\/dt>
Telluride Summer Workshop \"Energy Landscapes: Structure, Dynamics and Optimization Algorithms\"(7.20-8.3 ,2003), Telluride, Colorado USA<\/dd>
<\/div><\/div>

<\/p>\n\n

[21]<\/span><\/strong>Tamiki Komatsuzaki
Why can the system climb through the saddle from a basin to one another? Toward Unifying Reaction Rate Theories<\/strong><\/dt>
Telluride Summer Workshop (7.27-8.3 ,2003), Telluride, Colorado USA (invited talk)
organized by David J. Wales(Univ. of Cambridge),\n<\/dd>
<\/div><\/div>

<\/p>\n\n

[20]<\/span><\/strong>Yasuhiro Matsunaga, Konstantin S. Kostov , Tamiki Komatsuzaki
Multi-Basin Dynamics in Off-Lattice Minimalist Protein Landscapes<\/strong><\/dt>
Telluride Summer Workshop (7.27-8.3 ,2003), Telluride, Colorado USA (contributed talk)
organized by David J. Wales(Univ. of Cambridge)<\/dd>
<\/div><\/div>

<\/p>\n\n

[19]<\/span><\/strong>Yasuhiro Matsunaga
Ergodic behavior in Principal Component Space<\/strong><\/dt>
Aspen Center for Physics' Small Workshop(8.11 ,2003) (contributed talk)
organized by R. Stephen Berry, Aspen, Colorado USA<\/dd>
<\/div><\/div>

<\/p>\n\n

[18]<\/span><\/strong>Kosntantin S. Kostov, Mikito Toda, Yasuhiro Matsunaga, Tamiki Komatsuzaki
Extracting Dynamical Information about Protein Folding from Time Series Analysis<\/strong><\/dt>
226th ACS National Meeting(9.7-9.11 ,2003), New York, NY<\/dd>
<\/div><\/div>

<\/p>\n\n

[17]<\/span><\/strong>Yasuhiro Matsunaga, Konstantin S. Kostov, Tamiki Komatsuzaki
Multi-Basin Dynamics in Off-Lattice Minimalist Protein Landscapes<\/strong><\/dt>
Satelite Symposium of Geometrical Structures of Phase Space in Multi-Dimensional Chaos : Applications to Chemical Reaction Dynamics in Complex Systems(10.20-10.25 ,2003), Kobe, Japan (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[16]<\/span><\/strong>
JSPS-NSF Joint Seminar<\/strong><\/dt>
Geometrical Structures of Phase Space in Multi-Dimensional Chaos : Applications to Chemical Reaction Dynamics in Complex Systems(10.26-11.1 ,2003), Kyoto (invited talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[15]<\/span><\/strong>Yasuhiro Matsunaga, Konstantin S. Kostov, Tamiki Komatsuzaki
Hierarchical Regularity in Multi-Basin Dynamics on Protein Landscapes<\/strong><\/dt>
The 3rd International Symposium on Slow Dynamics in Complex Systems(11.3-11.8 ,2003), Sendai (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[14]<\/span><\/strong>Yasuhiro Matsunaga, Tamiki Komatsuzaki
Protein Folding Dynamics:Ergodic Behavior in Principal Component Space<\/strong><\/dt>
The 3rd International Symposium on Slow Dynamics in Complex Systems(11.3-11.8 ,2003), Sendai (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[13]<\/span><\/strong>Kyoko Hoshino, Yasuhiro Matsunaga, Mark Miller, David J. Wales, Tamiki Komatsuzaki
A Coarse-Graining of Energy Landscapes of Proteins -Structural Stability of the Most Stable States-<\/strong><\/dt>
The 3rd International Symposium on Slow Dynamics in Complex Systems(11.3-11.8 ,2003), Sendai, 3-8 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

2002<\/h3>
[12]<\/span><\/strong>Tamiki Komatsuzaki
A New Propensity Rule of Transitions in Chemical Reactions: Why and How Does a Reacting System Climb over the Saddle?<\/strong><\/dt>
Japan-China International Conference on Theoretical Chemistry(4.20-4.21 ,2002), Kyoto Japan (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[11]<\/span><\/strong>
<\/strong><\/dt>
Biological Physics Symposium(the celebration of 80th birthday of Prof. Hans Frauenfelder)(7.27-7.29 ,2002), Aspen Colorado, USA (participant)
organized by Robert Austin, David Pines and Peter Wolynes, Snowmass, <\/dd>
<\/div><\/div>

<\/p>\n\n

[10]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
A New Propensity Rule of Transitions in Chemical Reactions: Why and How does a Reacting System Climb over the Saddles?<\/strong><\/dt>
The 6th World Congress of Theoretically Oriented Chemists (WATOC) 2002(8.4-8.9 ,2002), Lugano, Switzerland (contributed talk) <\/dd>
<\/div><\/div>

<\/p>\n\n

[9]<\/span><\/strong>Yasuhiro Matsunaga, Konstantin S, Kostov, Tamiki Komatsuzaki
Multi-Basin Dynamics in Off-Lattice Minimalist Protein Landscapes<\/strong><\/dt>
The 6th World Congress of Theoretically Oriented Chemists (WATOC) 2002(8.4-8.9 ,2002), Lugano, Switzerland (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

2001<\/h3>
[8]<\/span><\/strong>Tamiki Komatsuzaki
Non-recrossing Reaction Path in Many-Body Phase Space: Hidden Deterministics of Why Reacting Systems Climb through Transition States<\/strong><\/dt>
A Symposium on Frontiers of Theoretical Chemistry(3.12-3.14 ,2001), Tokyo Japan (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[7]<\/span><\/strong>Tamiki Komatsuzaki
Hierarchical Regularities Buried in a Sea of Chaos: Chemical Reactions and Protein Foldings<\/strong><\/dt>
Telluride Summer Workshop (7.15-7.29 ,2001), Telluride, Colorado USA (invited) <\/dd>
<\/div><\/div>

<\/p>\n\n

[6]<\/span><\/strong>Yasuhiro Matsunaga, Tamiki Komatsuzaki
Hierarchical Regularity in Protein Folding Dynamics<\/strong><\/dt>
The 4th International Conference on Biological Physics(7.30-8.3 ,2001), Kyoto Japan (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[5]<\/span><\/strong>Yasuhiro Matsunaga, Tamiki Komatsuzaki
Protein Folding Dynamics --Anomalous Diffusion and Hierarchical Regularity<\/strong><\/dt>
International Conference on Molecular Physical Chemistry(12.17-12.19 ,2001), Okazaki Japan, 17-19 (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[4]<\/span><\/strong>Tamiki Komatsuzaki
Why and How does the System Climb Through the Saddles?-- No-return Dividing Surface in Phase Spaces<\/strong><\/dt>
nternational Conference on Molecular Physical Chemistry(12.17-12.19 ,2001), Okazaki Japan (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

2000<\/h3>
[3]<\/span><\/strong>Tamiki Komatsuzaki
Dynamical Hierarchy in Transition States: Why and How Systems Climb over the Transition State<\/strong><\/dt>
Workshop on Dynamical Problems on Condensed Chemical Systems of Clusters and Proteins(1.18-1.19 ,2000), Kobe Japan (organizer\u2019s contributed talk)
(organizer\u2019s contributed talk)<\/dd>
<\/div><\/div>

<\/p>\n\n

[2]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
Regularity in Chaotic Reaction Path -Universal, Multi-Dimensional Phase-Space Dividing Surface Free From Recrossing Problem<\/strong><\/dt>
Gordon Conference Chemical Physics Summer School(6.18-6.30 ,2000), Roger Williams University, RI, USA (poster) <\/dd>
<\/div><\/div>

<\/p>\n\n

[1]<\/span><\/strong>
<\/strong><\/dt>
International Conference on Dynamical Aspects of Complex Systems From Cells to Brain(11.29-12.1 ,2000), Sendai (participant) <\/dd>
<\/div><\/div>

<\/p>\n\n<\/div>\n","protected":false},"excerpt":{"rendered":"

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