{"id":279,"date":"2014-01-29T00:50:20","date_gmt":"2014-01-28T15:50:20","guid":{"rendered":"http:\/\/mlns.es.hokudai.ac.jp\/?page_id=279"},"modified":"2024-08-30T10:26:52","modified_gmt":"2024-08-30T01:26:52","slug":"publications_en","status":"publish","type":"page","link":"https:\/\/c-mng.cwh.hokudai.ac.jp\/mlns.es\/Root\/publications_en.html","title":{"rendered":"Publications"},"content":{"rendered":"

Paper<\/h3>\n

|2024<\/a>||2023<\/a>|2022<\/a>|2021<\/a>|2020<\/a>|2019<\/a>|2018<\/a>|2017<\/a>|2016<\/a> |2015<\/a> |2014<\/a> |2013<\/a> | 2012<\/a> | 2011<\/a> | 2010<\/a> | 2009<\/a> | 2008<\/a> | 2007<\/a> | 2006<\/a> | 2005<\/a> | 2004<\/a> | 2003<\/a> | 2002<\/a> | 2001<\/a> | 2000<\/a> | 1999<\/a> | 1998 | 1997<\/a> | 1996<\/a> | 1995 | 1994<\/a><\/p>\n

2024<\/h3>
[181]<\/span><\/strong>Tamiki Komatsuzaki
\nAn attempt of Seibutsu-Butsuri in Kyoto IUPAB Congress 2024<\/b>
Biophysical Reviews<\/i> , (2024)DOI<\/a>: 10.1007\/s12551-024-01241-2<\/dt>
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[180]<\/span><\/strong>Ryoichi Tanaka, Yuta Mizuno, Takuro Tsutsumi\t, Tetsuya Taketsugu, Tamiki Komatsuzaki\t
\nLow-dimensional projection of reactivity classes in chemical reaction dynamics using supervised dimensionality reduction<\/b>
Journal of Chemical Physics<\/i> 161<\/b>(15), pp.154103-1-154103-12 (2024)DOI<\/a>: 10.1063\/5.0230618<\/dt>
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[179]<\/span><\/strong>Yuta Mizuno, Tamiki Komatsuzaki
\nQuantum algorithm for dynamic mode decomposition integrated with a quantum differential equation solver<\/b>
Phys. Rev. Research<\/i> 6<\/b>, pp.043031-1-043031-6 (2024)DOI<\/a>: 10.1103\/PhysRevResearch.6.043031<\/dt>
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[178]<\/span><\/strong>Tamiki Komatsuzaki
\nOn-the-fly Raman microscopy guaranteeing the accuracy of discrimination<\/b>
Proc. SPIE 13006, Biomedical Spectroscopy, Microscopy, and Imaging III<\/i> 13006<\/b>, pp.1300602 , (2024)DOI<\/a>: 10.1117\/12.3016553<\/dt>
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[177]<\/span><\/strong>Md. Menhazul Abedin, Koji Tabata, Yoshihiro Matsumura, Tamiki Komatsuzaki
\nMulti-armed bandit algorithm for sequential experiments of molecular properties with dynamic feature selection<\/b>
The Journal of chemical physics<\/i> 161<\/b>(1), pp.014115, (2024)DOI<\/a>: 10.1063\/5.0206042<\/dt>
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[176]<\/span><\/strong>Yutaka Nagahata, Masato Kobayashi, Mikito Toda, Satoshi Maeda, Tetsuya Taketsugu, Tamiki Komatsuzaki\t
\nAn encompassed representation of timescale hierarchies in first-order reaction network<\/b>
Proceedings of the National Academy of Sciences<\/i> 121<\/b>(21), pp.e2317781121, (2024)DOI<\/a>: 10.1073\/pnas.2317781121<\/dt>
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[175]<\/span><\/strong>Sulimon Sattari, Udoy S. Basak, M. Mohiuddin, Mikito Toda, Tamiki Komatsuzaki
\nInferring the roles of individuals in collective systems using information-theoretic measures of influence<\/b>
Biophysics and Physicobiology<\/i> , (2024)DOI<\/a>: 10.2142\/biophysico.bppb-v21.s014<\/dt>
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[174]<\/span><\/strong>Koji Tabata, Hiroyuki Kawagoe, J Nicholas Taylor, Kentaro Mochizuki, Toshiki Kubo, Jean-Emmanuel Clement, Yasuaki Kumamoto, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita, Tamiki Komatsuzaki
\nOn-the-fly Raman microscopy guaranteeing the accuracy of discrimination<\/b>
Proceedings of the National Academy of Sciences of the United States of America<\/i> 121<\/b>(12), pp.e2304866121, (2024)DOI<\/a>: 10.1073\/pnas.2304866121<\/dt>
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[173]<\/span><\/strong>Yuta Mizuno, Tamiki Komatsuzaki
\nFinding Optimal Pathways in Chemical Reaction Networks Using Ising Machines<\/b>
Physical Review Research<\/i> 6<\/b>, pp.013115-1-013115-24 (2024)DOI<\/a>: 10.1103\/PhysRevResearch.6.013115<\/dt>
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2023<\/h3>
[172]<\/span><\/strong>Tatsuya Hayashi, Naoki Ito , Koji Tabata, Atsuyoshi Nakamura, Katsumasa Fujita, Yoshinori Harada , Tamiki Komatsuzaki
\nGaussian process classification bandits<\/b>
Pattern Recognition<\/i> 149<\/b>(110224), (2023)DOI<\/a>: 10.1016\/j.patcog.2023.110224<\/dt>
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[171]<\/span><\/strong>Xun Sun, Jonas Alfermann, Hao Li, Maxwell B. Watkins, Yi-Tsao Chen, Thomas E. Morrell, Florian Mayerthaler, Chia-Ying Wang, Tamiki Komatsuzaki, Jhih-Wei Chu, Nozomi Ando, Henning D. Mootz, Haw Yang
\nSubdomain dynamics enable chemical chain reactions in non-ribosomal peptide synthetases<\/b>
Nature Chemistry<\/i> 16<\/b>, pp.259-268 (2023)DOI<\/a>: 10.1038\/s41557-023-01361-4<\/dt>
URL<\/a> See Xun's Springer Nature Research Communities<\/b><\/dd><\/dl><\/div><\/div>
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[170]<\/span><\/strong>Nicholas J. Taylor, Aur\u00e9lien P\u00e9lissier, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Thomas Bocklitz, Tamiki Komatsuzaki
\nCorrection for Extrinsic Background in Raman Hyperspectral Images<\/b>
Analytical Chemistry<\/i> 95<\/b>(33), pp.12298-12305 (2023)DOI<\/a>: 10.1021\/acs.analchem.3c01406<\/dt>
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[169]<\/span><\/strong>Udoy S. Basak, Sulimon Sattari, Md. Motaleb Hossain, Kazuki Horikawa, MikitoToda, Tamiki Komatsuzaki
\nComparison of particle image velocimetry and the underlying agents dynamics in collectively moving self propelled particles<\/b>
Scientific Reports<\/i> 13<\/b>(12566), (2023)DOI<\/a>: 10.1038\/s41598-023-39635-z<\/dt>
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[168]<\/span><\/strong>Abdul Halim Bhuiyan, Jean-Emmanuel Cl\u00e9ment, Zannatul Ferdous, Kentaro Mochizuk, Koji Tabata, James Nicholas Taylor, Yasuaki Kumamoto, Yoshinori Harada, Thomas Bocklitz, Katsumasa Fujita, Tamiki Komatsuzaki
\nDifferentiability of cell types enhanced by detrending a non-homogeneous pattern in a line-illumination Raman microscope<\/b>
The Analyst<\/i> 148<\/b>, pp.3574-3583 (2023)DOI<\/a>: 10.1039\/d3an00516j<\/dt>
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[167]<\/span><\/strong>Khalifa Mohammad Helal\t, Harsono Cahyadi, Nicholas James Taylor, Akira Okajima, Koji Tabata, Yasuaki Kumamoto, Kentaro Mochizuki, Yoshito Itoh, Tetsuro Takamatsu, Hideo Tanaka, Katsumasa Fujita\t, Tamiki Komatsuzaki\t, Yoshinori Harada
\nRaman imaging of rat nonalcoholic fatty liver tissuesreveals distinct biomolecular states<\/b>
FEBS Letters<\/i> 597<\/b>(11), pp.1517-1527 (2023)DOI<\/a>: 10.1002\/1873-3468.14600<\/dt>
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[166]<\/span><\/strong>Mikhail Tsitsvero, Jenny Pirillo, Yuh Hijikata, Tamiki Komatsuzaki
\nNMR spectrum prediction for dynamic molecules by machine learning: A case study of trefoil knot molecule<\/b>
The Journal of Chemical Physics<\/i> 158<\/b>(19), pp.194108-1-194108-10 (2023)DOI<\/a>: 10.1063\/5.0147398<\/dt>
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[165]<\/span><\/strong>\u7530\u7551 \u516c\u6b21, \u4e2d\u6751 \u7be4\u7965, \u9ad8\u898b \u4eae\u4f51, Joshua Arenson, \u548c\u7530 \u5f25\u751f, Walker Peterson, \u5408\u7530 \u572d\u4ecb, \u5712\u4e0b \u5c06\u5927, \u5c0f\u677e\u5d0e \u6c11\u6a39
\n\u5358\u8abf\u5897\u52a0\u5236\u7d04\u306e\u3042\u308b\u30ec\u30d9\u30eb\u30bb\u30c3\u30c8\u63a8\u5b9a<\/b>
\u4eba\u5de5\u77e5\u80fd\u5b66\u4f1a\u7814\u7a76\u4f1a\u8cc7\u6599 \u4eba\u5de5\u77e5\u80fd\u57fa\u672c\u554f\u984c\u7814\u7a76\u4f1a<\/i> 124<\/b>, pp.25-30 (2023)<\/dt>
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[164]<\/span><\/strong>Tamiki Komatsuzaki
\nOn-the-fly Raman microscopy guaranteeing the accuracy of diagnosis by reinforcement learning<\/b>
Progress in Biomedical Optics and Imaging - Proceedings of SPIE<\/i> , (2023)DOI<\/a>: 10.1117\/12.2652139<\/dt>
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[163]<\/span><\/strong>Koji Tabata, Junpei Komiyama, Atsuyoshi Nakamura, Tamiki Komatsuzaki
\nPosterior Tracking Algorithm for Classification Bandits<\/b>
Proceedings of The 26th International Conference on Artificial Intelligence and Statistics<\/i> 206<\/b>, pp.10994-11022 (2023)<\/dt>
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2022<\/h3>
[162]<\/span><\/strong>\u6c34\u91ce\u96c4\u592a
\n\u5316\u5b66\u53cd\u5fdc\u30cd\u30c3\u30c8\u30ef\u30fc\u30af\u89e3\u6790\u3068\u91cf\u5b50\u30a2\u30cb\u30fc\u30ea\u30f3\u30b0<\/b>
\u7406\u8ad6\u5316\u5b66\u4f1a\u8a8c\u300c\u30d5\u30ed\u30f3\u30c6\u30a3\u30a2\u300d<\/i> 4<\/b>(4), pp.201-211 (2022)<\/dt>
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[161]<\/span><\/strong>\u8fd1\u85e4\u50da\u54c9, \u6c34\u91ce\u96c4\u592a, \u5c0f\u677e\u5d0e\u6c11\u6a39
\n\u30e9\u30de\u30f3\u5206\u5149\u7d44\u7e54\u5b66\u2014\u30e9\u30de\u30f3\u9855\u5fae\u8a08\u6e2c\u3068\u30c7\u30fc\u30bf\u79d1\u5b66\u306e\u878d\u5408\u2014<\/b>
\u7406\u8ad6\u5316\u5b66\u4f1a\u8a8c \u300c\u30d5\u30ed\u30f3\u30c6\u30a3\u30a2\u300d<\/i> 4<\/b>(3), pp.130-138 (2022)<\/dt>
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[160]<\/span><\/strong>Zannatul Ferdous, Jean-Emmanuel Clement, Jian Ping Gong, Shinya Tanaka, Tamiki Komatsuzaki, Masumi Tsuda
\nGeometrical analysis identified morphological features of hydrogel-induced cancer stem cells in synovial sarcoma model cells<\/b>
Biochemical and Biophysical Research Communications<\/i> 642<\/b>, pp.41-49 (2022)DOI<\/a>: 10.1016\/j.bbrc.2022.12.040<\/dt>
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[159]<\/span><\/strong>Michiyo Hayakawa, J Nicholas Taylor, Ryuta Nakao, Kentaro Mochizuki, Yuki Sawai, Kosuke Hashimoto, Koji Tabata, Yasuaki Kumamoto, Katsumasa Fujita, Eiichi Konishi, Shigeru Hirano, Hideo Tanaka, Tamiki Komatsuzaki, Yoshinori Harada
\nLipid droplet accumulation and adipophilin expression in follicular thyroid carcinoma<\/b>
Biochemical and biophysical research communications<\/i> 640<\/b>, pp.192-201 (2022)DOI<\/a>: 10.1016\/j.bbrc.2022.12.007<\/dt>
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[158]<\/span><\/strong>Akira Hirota, Jean-Emmanuel Cl\u00e9ment, Satoshi Tanikawa, Takayuki Nonoyama, Tamiki Komatsuzaki, Jian Ping Gong, Shinya Tanaka , Masamichi Imajo
\nERK MAP Kinase Signaling Regulates RAR Signaling to Confer Retinoid Resistance on Breast Cancer Cells<\/b>
Cancers <\/i> 14<\/b>(5890), (2022)DOI<\/a>: 10.3390\/cancers14235890<\/dt>
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[157]<\/span><\/strong>Sulimon Sattari, Udoy S. Basak, Ryan G. James, Louis W. Perrin, James P. Crutchfield, Tamiki Komatsuzaki
\nModes of information flow in collective cohesion<\/b>
Science Advances<\/i> 8<\/b>(6), (2022)DOI<\/a>: 10.1126\/sciadv.abj1720<\/dt>
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[156]<\/span><\/strong>Srihari Keshavamurthy, Tamiki Komatsuzaki, David Leitner
\nRichard Stephen Berry\uff081931-2020\uff09<\/b>
Resonance<\/i> 27<\/b>(1), pp.11-17 (2022)DOI<\/a>: 10.1007\/s12045-022-1290-9<\/dt>
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[155]<\/span><\/strong>Tatsuya Hayashi, Naoki Ito, Koji Tabata, Atsuyoshi Nakamura, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
\nGaussian Process Classification Bandits<\/b>
CoRR<\/i> abs\/2212.13157<\/b>, (2022)DOI<\/a>: 10.48550\/arXiv.2212.13157<\/dt>
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2021<\/h3>
[154]<\/span><\/strong>Yutaka Nagahata, Rigoberto Hernandez, Tamiki Komatsuzaki
\nPhase space geometry of isolated to condensed chemical reactions<\/b>
J. Chem. Phys. <\/i> 155<\/b>, pp.210901-1-210901-17 (2021)DOI<\/a>: 10.1063\/5.0059618<\/dt>
File<\/a> Selected by cover art<\/b><\/dd><\/dl><\/div><\/div>
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[153]<\/span><\/strong>Koji Tabata, Atsuyoshi Nakumura, Tamiki Komatsuzaki
\nClassification Bandits: Classification Using Expected Rewards as Imperfect Discriminators<\/b>
Pacific-Asia Conference on Knowledge Discovery and Data Mining, Workshop on Machine Learning for MEasurement INformatics<\/i> , pp.57-69 (2021)DOI<\/a>: 10.1007\/978-3-030-75015-2_6<\/dt>
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[152]<\/span><\/strong>Yuta Mizuno, Mikoto Takigawa, Saki Miyashita, Yutaka Nagahata, Hiroshi Teramoto, Tamiki Komatsuzaki
\nAn algorithm for computing phase space structures in chemical reaction dynamics using Voronoi tessellation<\/b>
Physica D: Nonlinear Phenomena<\/i> 428<\/b>, (2021)DOI<\/a>: 10.1016\/j.physd.2021.133047<\/dt>
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[151]<\/span><\/strong>Udoy S. Basak, Sulimon Sattari, Md. Motaleb Hossain, Kazuki Horikawa, Tamiki Komatsuzaki
\nTransfer entropy dependent on distance among agents in quantifying leader-follower relationships<\/b>
Biophysics and Physicobiology<\/i> 18<\/b>, pp.131-144 (2021)DOI<\/a>: 10.2142\/biophysico.bppb-v18.015<\/dt>
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[150]<\/span><\/strong>Tamiki Komatsuzaki\t, Haruki Nakamura\t, Jeremy Tame\t, Saeko Yanaka\t, Takeharu Nagai\t, Kuniaki Nagayama\t
\nEditorial for the Special Issue of Biophysical Reviews focused on the Biophysical Society of Japan with select scientific content from the 57th BSJ annual meeting, Miyazaki, Japan<\/b>
Biophysical Reviews<\/i> 12<\/b>, pp.183-185 (2021)DOI<\/a>: 10.1007\/s12551-020-00691-8<\/dt>
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[149]<\/span><\/strong>Yuya Sugie, Yuki Yoshida, Normann Mertig, Takashi Takemoto, Hiroshi Teramoto, Atsuyoshi Nakamura, Ichigaku Takigawa, Shin-ichi Minato, Masanao Yamaoka, Tamiki Komatsuzaki
\nMinor-embedding heuristics for large-scale annealing processors with sparse hardware graphs of up to 102,400 nodes<\/b>
Soft Computing<\/i> 25<\/b>, pp.1731-1749 (2021)DOI<\/a>: 10.1007\/s00500-020-05502-6<\/dt>
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[148]<\/span><\/strong>Udoy S. Basak, Sulimon Sattari, Md. Motaleb Hossain, Kazuki Horikawa, Tamiki Komatsuzaki
\nAn information-theoretic approach to infer the underlying interaction domain among elements from finite length trajectories in a noisy environment<\/b>
J. Chem. Phys. <\/i> 154<\/b>, pp.034901-1-034901-12 (2021)DOI<\/a>: 10.1063\/5.0034467<\/dt>
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[147]<\/span><\/strong>Yuta Mizuno, Tamiki Komatsuzaki
\nA Note on Enumeration by Fair Sampling<\/b>
arXiv<\/i> , (2021)DOI<\/a>: 10.48550\/arXiv.2104.01941<\/dt>
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2020<\/h3>
[146]<\/span><\/strong>Udoy S. Basak, Sulimon Sattari, Kazuki Horikawa, Tamiki Komatsuzaki
\nErratum: Inferring domain of interactions among particles from ensemble of trajectories<\/b>
Physical Review E<\/i> 102<\/b>(124040), pp. 069902-1- 069902-3 (2020)DOI<\/a>: 10.1103\/PhysRevE.102.069902<\/dt>
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[145]<\/span><\/strong>Hiroshi Uchigaito, Tomoki Shirai, Yoichi Iwata, Normann Mertig, Yuya Sugie, Tsubasa Oizumi, Hiroshi Teramoto, Atsuyoshi Nakamura, Shin-ichi Minato, Tamiki Komatsuzaki, Takashi Takemoto
\nMinimizing customer waiting time with a new delivery-tour planning algorithm based on tour division and dynamic route optimization<\/b>
International Symposium on Nonlinear Theory and Its Applications (NOLTA2020)<\/i> , pp.413-416 (2020)<\/dt>
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[144]<\/span><\/strong>Munehito Arai, Tamiki Komatsuzaki, Haruki Nakamura
\nEditorial<\/b>
Biophysics and Physicobiology<\/i> 17<\/b>, pp.155-155 (2020)DOI<\/a>: https:\/\/doi.org\/10.2142\/biophysico.BSJ-2020030<\/dt>
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[143]<\/span><\/strong>Nobuo Shimamoto, Mikito Toda, Shigetoshi Nara, Tamiki Komatsuzaki, Kiyoto Kamagata, Takashi Kinebuchi, Jun\u2011ichi Tomizawa
\nDependence of DNA length on binding affinity between TrpR and trpO of DNA<\/b>
Scientific Reports<\/i> 10<\/b>(15624), (2020)DOI<\/a>: 10.1038\/s41598-020-71598-3<\/dt>
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[142]<\/span><\/strong>Udoy S. Basak, Sulimon Sattari, Kazuki Horikawa, Tamiki Komatsuzaki
\nInferring domain of interactions among particles from ensemble of trajectories<\/b>
Phys. Rev. E<\/i> 102<\/b>(1), pp. 012404-1- 012404-9 (2020)DOI<\/a>: 10.1103\/PhysRevE.102.012404<\/dt>
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[141]<\/span><\/strong>Tomoyasu Aizawa, Makoto Demura, Kazutoshi Gohara, Hisashi Haga, Koichiro Ishimori, Masataka Kinjo, Tamiki Komatsuzaki, Katsumi Maenaka, Min Yao
\nBiophysical Research in Hokkaido University, Japan<\/b>
Biophysical Reviews<\/i> 12<\/b>(2), pp.233-236 (2020)DOI<\/a>: 10.1007\/s12551-020-00649-w<\/dt>
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[140]<\/span><\/strong>Tamiki Komatsuzaki, Haruki Nakamura, Jeremy Tame, Saeko Yanaka, Takeharu Nagai, Kuniaki Nagayama
\nEditorial for the Special Issue of Biophysical Reviews focused on the Biophysical Society of Japan with select scientific content from the 57th BSJ annual meeting, Miyazaki, Japan<\/b>
Biophysical Reviews<\/i> 12<\/b>, pp.183-185 (2020)DOI<\/a>: 10.1007\/s12551-020-00691-8<\/dt>
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[139]<\/span><\/strong>Koji Tabata, Atsuyoshi Nakamura, Junya Honda, Tamiki Komatsuzaki
\nA bad arm existence checking problem: How to utilize asymmetric problem structure?<\/b>
Machine Learning<\/i> 109<\/b>, pp.327-372 (2020)DOI<\/a>: 10.1007\/s10994-019-05854-7<\/dt>
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[138]<\/span><\/strong>Hiroshi Teramoto, Asahi Tsuchida, Kenji Kondo, Shyuichi Izumiya, Mikito Toda, Tamiki Komatsuzaki
\nApplication of Singularity Theory to Bifurcation of Band Structures in Crystals<\/b>
The Journal of Singularities<\/i> 21<\/b>, pp.289-302 (2020)DOI<\/a>: 10.5427\/jsing.2020.21p<\/dt>
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2019<\/h3>
[137]<\/span><\/strong>Khalifa Mohammad Helal, James Nicholas Taylor, Harsono Cahyadi, Akira Okajima, Koji Tabata, Yoshito Itoh, Hideo Tanaka, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
\nRaman spectroscopic histology using machine learning for nonalcoholic fatty liver disease<\/b>
FEBS Letters<\/i> 593<\/b>, pp.2535-2544 (2019)DOI<\/a>: 10.1002\/1873-3468.13520<\/dt>
File<\/a> <\/dd><\/dl><\/div><\/div>
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[136]<\/span><\/strong>Tamiki Komatsuzaki, Steve Press\u00e9, Patrick Senet
\nDeciphering Molecular Complexity in Dynamics and Kinetics - From the Single Molecule to the Single Cell Level<\/b>
The Journal of Physical Chemistry B<\/i> 123<\/b>(30), pp.6387-6388 (2019)DOI<\/a>: 10.1021\/acs.jpcb.9b05382<\/dt>
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[135]<\/span><\/strong>J. Nicholas Taylor, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
\nHigh-Resolution Raman Microscopic Detection of Follicular Thyroid Cancer Cells with Unsupervised Machine Learning<\/b>
The Journal of Physical Chemistry B<\/i> 123<\/b>(20), pp.4358-4372 (2019)DOI<\/a>: 10.1021\/acs.jpcb.9b01159<\/dt>
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<\/p>\n\n

[134]<\/span><\/strong>Aurelien Pelissier, Atsuyoshi Nakamura, Koji Tabata
\nFeature selection as Monte-Carlo Search in Growing Single Rooted Directed Acyclic Graph by Best Leaf Identi\ufb01cation<\/b>
Proceedings of the 2019 SIAM International Conference on Data Mining<\/i> PRDT19<\/b>, pp.450-458 (2019)DOI<\/a>: 10.1137\/1.9781611975673.51<\/dt>
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<\/p>\n\n

2018<\/h3>
[133]<\/span><\/strong>Takashi Takemoto, Normann Mertig, Masato Hayashi, Saki Susa-Tanaka, Hiroshi Teramoto, Atsuyoshi Nakamura, Ichigaku Takigawa, Shin-ichi Minato, Tamiki Komatsuzaki, Masanao Yamaoka
\nFPGA-Based QBoost with Large-Scale Annealing Processor and Accelerated Hyperparameter Search<\/b>
2018 International Conference on ReConFigurable Computing and FPGAs (ReConFig), Cancun, Mexico<\/i> , pp.1-8 (2018)DOI<\/a>: 10.1109\/RECONFIG.2018.8641713<\/dt>
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<\/p>\n\n

[132]<\/span><\/strong>Yuya Sugie, Yuki Yoshida, Normann Mertig, Takashi Takemoto, Hiroshi Teramoto, Atsuyoshi Nakamura, Ichigaku Takigawa, Shin-ichi Minato, Masanao Yamaoka, Tamiki Komatsuzaki
\nGraph Minors from Simulated Annealing for Annealing Machines with Sparse Connectivity<\/b>
Theory and Practice of Natural Computing - 7th International Conference, TPNC 2018, Dublin, Ireland, December 12-14, 2018, Proceedings<\/i> , pp.111-123 (2018)DOI<\/a>: 10.1007\/978-3-030-04070-3_9<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[131]<\/span><\/strong>Sosuke Ito
\nStochastic thermodynamic interpretation of information geometry<\/b>
Physical Review Letters<\/i> 121<\/b>(3), pp.030605-1-030605-7 (2018)DOI<\/a>: 10.1103\/PhysRevLett.121.030605<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[130]<\/span><\/strong>James Nicholas Taylor, Menahem Pirchi, Gilad Haran, Tamiki Komatsuzaki
\nDeciphering hierarchical features in the energy landscape of adenylate kinase folding\/unfolding<\/b>
The Journal of Chemical Physics<\/i> 148<\/b>, pp.123325-1-123325-14 (2018)DOI<\/a>: 10.1063\/1.5016487<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

2017<\/h3>
[129]<\/span><\/strong>Yuji Tamiy, Rikiya Watanabe, Hiroyuki Noji, Chun-Biu Li, Tamiki Komatsuzaki
\nEffects of non-equilibrium angle fluctuation on F1-ATPase kinetics induced by temperature increase<\/b>
Physical Chemistry Chemical Physics<\/i> 3<\/b>(20), pp.1872-1880 (2017)DOI<\/a>: 10.1039\/C7CP06256G<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[128]<\/span><\/strong>\u51a8\u6a2b\u7950\u4e00, \u65b0\u6d77\u5275\u4e5f, \u5c0f\u677e\u5d0e\u6c11\u6a39
\n\u7279\u96c6\uff1a\u5c11\u6570\u6027\u751f\u7269\u5b66\u3063\u3066\u306a\u3093\u3060\uff1f: \u300c\u5c11\u6570\u3068\u500b\u6027\u2015\u5206\u5b50\u306e\u6570\u3068\u751f\u547d\u3089\u3057\u3055\u300d<\/b>
\u5b9f\u9a13\u533b\u5b66<\/i> 35<\/b>(19), (2017)<\/dt>
<\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[127]<\/span><\/strong>Nathan Hervieux, Satoru Tsugawa, Antoine Fruleux, Mathilde Dumond, Anne-Lise Routier-Kierzkowska, Tamiki Komatsuzaki, Arezki Boudaoud, John C. Larkin, Richard S. Smith, Chun-Biu Li, Olivier Hamant
\nMechanical Shielding of Rapidly Growing Cells Buffers Growth Heterogeneity and Contributes to Organ Shape Reproducibility<\/b>
Current Biology<\/i> 27<\/b>(22), pp.3468-3479 (2017)DOI<\/a>: 10.1016\/j.cub.2017.10.033<\/dt>
<\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[126]<\/span><\/strong>\u4f0a\u85e4 \u5275\u7950, \u6c99\u5ddd \u8cb4\u5927
\n\u30cd\u30c3\u30c8\u30ef\u30fc\u30af\u4e0a\u306e\u60c5\u5831\u71b1\u529b\u5b66\u3068\u305d\u306e\u751f\u4f53\u60c5\u5831\u51e6\u7406\u3078\u306e\u5fdc\u7528<\/b>
\u65e5\u672c\u7269\u7406\u5b66\u4f1a\u8a8c<\/i> 72<\/b>(9), pp.658-658 (2017)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[125]<\/span><\/strong>Jonas Alfermann, Xun Sun, Florian Mayerthaler, Thomas E. Morrell, Eva Dehling, Gerrit Volkmann, Tamiki Komatsuzaki, Haw Yang, Henning D. Mootz
\nFRET monitoring of a nonribosomal peptide synthetase<\/b>
Nature Chemical Biology<\/i> 13<\/b>, pp.1009-1015 (2017)DOI<\/a>: 10.1038\/nchembio.2435<\/dt>
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<\/p>\n\n

[124]<\/span><\/strong>Hiroshi Teramoto, Kenji Kondo, Shyuichi Izumiya, Mikito Toda, Tamiki Komatsuzaki
\nClassification of Hamiltonians in neighborhoods of band crossings in terms of the theory of singularities<\/b>
Journal of Mathematical Physics<\/i> 58<\/b>, pp.073502-1-073502-39 (2017)DOI<\/a>: 10.1063\/1.4991662<\/dt>
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<\/p>\n\n

2016<\/h3>
[123]<\/span><\/strong>Laurent Wiesenfeld, Wing-Fai Thi, Paola Caselli, Alexandre Faure, Luca Bizzocchi, Jo\u00e3o Brand\u00e3o, Denis Duflot, Eric Herbst, Stephen J. Klippenstein, Tamiki Komatsuzaki, Cristina Puzzarini, Octavio oncero, Hiroshi Teramoto, Mikito Toda, Ad van der Avoird, Holger Waalkens
\nTheory of Gas Phase Scattering and Reactivity for Astrochemistry<\/b>
Report from the Workshop on Theory of Gas Phase Scattering and Reactivity for Astrochemistry Nov 23 \u2013 Dec 4, 2015<\/i> , (2016)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[122]<\/span><\/strong>Tamiki Komatsuzaki
\n\u30c7\u30fc\u30bf\u79d1\u5b66\u96d1\u611f<\/b>
\u751f\u7269\u7269\u7406<\/i> 56<\/b>(4), pp.197-197 (2016)DOI<\/a>: 10.2142\/biophys.56.197<\/dt>
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<\/p>\n\n

[121]<\/span><\/strong>L. Hong, M. Dumond, S. Tsugawa, A. Sapala, A.-L. Routier-Kierzkowska, Y. Zhou, C. Chen, A. Kiss, M. Zhu, O. Hamant, R. S. Smith, T. Komatsuzaki, C.-B. Li, A. Boudaoud & A. H. K. Roeder
\nVariable cell growth yields reproducible organ development through spatiotemporal averaging<\/b>
Developmental Cell<\/i> 38<\/b>(1), pp.15-32 (2016)DOI<\/a>: 10.1016\/j.devcel.2016.06.016<\/dt>
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<\/div>

<\/p>\n\n

[120]<\/span><\/strong>Satoru Tsugawa, Nathan Hervieux, Olivier Hamant, Arezki Boudaoud, Richard S. Smith, Chun-Biu Li, Tamiki Komatsuzaki
\nExtracting subcellular fibrillar alignment with error estimation: Application to microtubules<\/b>
Biophysical Journal<\/i> 110<\/b>(8), pp.1836-1844 (2016)DOI<\/a>: 10.1016\/j.bpj.2016.03.011<\/dt>
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<\/p>\n\n

2015<\/h3>
[119]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
\nUnderstandings of chemical reaction dynamics in terms of dynamical systems theory<\/b>
AIP Conference Proceedings<\/i> 1702<\/b>(90042), (2015)DOI<\/a>: 10.1063\/1.4938850<\/dt>
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<\/div>

<\/p>\n\n

[118]<\/span><\/strong>C.B. Li, H. Ueno, R. Watanabe, H. Noji, T. Komatsuzaki
\nATP hydrolysis assists phosphate release and promotes reaction ordering in F1-ATPase<\/b>
Nature Communications<\/i> 6<\/b>(10223), (2015)DOI<\/a>: 10.1038\/ncomms10223<\/dt>
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<\/div>

<\/p>\n\n

[117]<\/span><\/strong>Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki
\nDeciphering Time Scale Hierarchy in Reaction Networks<\/b>
The Journal of Physical Chemistry B<\/i> 120<\/b>(8), pp.1961-1971 (2015)DOI<\/a>: 10.1021\/acs.jpcb.5b09941<\/dt>
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<\/div>

<\/p>\n\n

[116]<\/span><\/strong>Yosuke Sumiya, Yutaka Nagahata, Tamiki Komatsuzaki, Tetsuya Taketsugu, Satoshi Maeda
\nKinetic Analysis for the Multistep Profiles of Organic Reactions: Significance of the Conformational Entropy on the Rate Constants of the Claisen Rearrangement<\/b>
The Journal of Physical Chemistry A<\/i> 119<\/b>(48), pp.11641-11649 (2015)DOI<\/a>: 10.1021\/acs.jpca.5b09447<\/dt>
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<\/div>

<\/p>\n\n

[115]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Masahiko Takahashi, Hirohiko Kono, Tamiki Komatsuzaki
\nMechanism and Experimental Observability of Global Switching Between Reactive and Nonreactive Coordinates at High Total Energies<\/b>
PHYSICAL REVIEW LETTERS<\/i> 115<\/b>(093003), (2015)DOI<\/a>: 10.1103\/PhysRevLett.115.093003<\/dt>
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<\/div>

<\/p>\n\n

[114]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
\nBreakdown Mechanism of Normally Hyperbolic Invariant Manifold in terms of unstable periodic orbits and homoclinic\/heteroclinic orbits in Hamiltonian Systems<\/b>
Nonlinearity<\/i> 28<\/b>, pp.2677-2698 (2015)DOI<\/a>: 10.1088\/0951-7715\/28\/8\/2677<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[113]<\/span><\/strong>J. N. Taylor, C.-B. Li, D. Cooper, C. F. Landes, T. Komatsuzaki
\nError-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series<\/b>
Scientific Reports<\/i> 5<\/b>, pp.9174-1-9174-9 (2015)DOI<\/a>: 10.1038\/srep09174<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[112]<\/span><\/strong>Y. Tamiya, S. Shinkai, Y. Aizawa
\nLog-Weibull Law in Fermi-Pasta-Ulam Oscillator Chain : Induction Time as Nekhoroshev Stability Time<\/b>
ASTE; Advances in Science, Technology and Environmentology, Special issue on New Challenges in Complex Systems Science<\/i> B11<\/b>, pp.181-184 (2015)<\/dt>
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<\/div>

<\/p>\n\n

[111]<\/span><\/strong>Chun Biu Li
\nChallenges in Constructing State-Space Network Models for Complex Systems at the Single Molecule Level<\/b>
ASTE; Advances in Science, Technology and Environmentology, Special issue on New Challenges in Complex Systems Science<\/i> B11<\/b>, pp.51-54 (2015)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[110]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
\nA coarse graining method to extract cooperative modes of water molecules<\/b>
ASTE; Advances in Science, Technology and Environmentology, Special issue on New Challenges in Complex Systems Science<\/i> B11<\/b>, pp.7-12 (2015)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[109]<\/span><\/strong>Satoru Tsugawa, Yoji Aizawa
\nStatistical Laws of the Ensemble Average Associated with Allan Variance<\/b>
ASTE; Advances in Science, Technology and Environmentology, Special issue on New Challenges in Complex Systems Science<\/i> B11<\/b>, pp.197-199 (2015)<\/dt>
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<\/div>

<\/p>\n\n

2014<\/h3>
[108]<\/span><\/strong>Tamiki Komatsuzaki
\nBridge the Differences between Top-down and Bottom-up<\/b>
Seitai no Kagaku<\/i> 65<\/b>(5), pp.444-445 (2014)<\/dt>
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<\/div>

<\/p>\n\n

[107]<\/span><\/strong>Hideyuki Yaginuma, Shinnosuke Kawai, Kazuhito V. Tabata, Keisuke Tomiyama, Akira Kakizuka, Tamiki Komatsuzaki, Hiroyuki Noji, Hiromi Imamura
\nDiversity in ATP concentrations in a single bacterial cell population revealed by quantitative single-cell imaging<\/b>
Scientific Reports<\/i> 4<\/b>(6522), pp.1-7 (2014)DOI<\/a>: 10.1038\/srep06522<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[106]<\/span><\/strong>Chun-Biu Li, Tamiki Komatsuzaki
\nHandling Noisy Data from Single Molecule Experiments<\/b>
SEIBUTSU BUTSURI<\/i> 54<\/b>(5), pp.257-258 (2014)DOI<\/a>: 10.2142\/biophys.54.257<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[105]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
\nA New Method to Improve Validity Range of Lie Canonical Perturbation Theory: With a Central Focus on a Concept of Non Blow-Up Region<\/b>
Theoretical Chemistry Accounts<\/i> 133<\/b>, pp.1571, (2014)DOI<\/a>: 10.1007\/s00214-014-1571-9<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[104]<\/span><\/strong>Preetom Nag, Hiroshi Teramoto, Chun-Biu Li, Joseph Z. Terdik, Norbert F. Scherer, Tamiki Komatsuzaki
\nLocal-heterogeneous responses and transient dynamics of cage breaking<\/b>
The Journal of Chemical Physics<\/i> 141<\/b>, pp.104907-1-104907-12 (2014)DOI<\/a>: 10.1063\/1.4894866<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[103]<\/span><\/strong>B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, J. Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes
\nFast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis<\/b>
The Journal of Physical Chemistry Letters<\/i> 5<\/b>, pp.3157-3161 (2014)DOI<\/a>: 10.1021\/jz501435p<\/dt>
<\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

2013<\/h3>
[102]<\/span><\/strong>Tahmina Sultana, Hiroaki Takagi, Miki Morimatsu, Hiroshi Teramoto, Chun-Biu Li, Yasushi Sako, Tamiki Komatsuzaki
\nNon-Markovian properties and multiscale Hidden Markovian Network Buried in Single Molecule Time Series<\/b>
The Journal of Chemical Physics<\/i> 139<\/b>, pp.245101-245101-12 (2013)DOI<\/a>: 10.1063\/1.4848719<\/dt>
This paper was chosen as one of the most-accessed articles in Biological Molecules and Networks from The Journal of Chemical Physics.<\/font><\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[101]<\/span><\/strong>Yasuhiro Matsunaga, Akinori Baba, Chun Biu Li, John Straub, Mikito Toda, Tamiki Komatsuzaki, R. Stephen Berry
\nSpatio-temporal hierarchy in the dynamics of a minimalist protein model<\/b>
The Journal of Chemical Physics<\/i> 139<\/b>, pp.215101-215101-13 (2013)DOI<\/a>: 10.1063\/1.4834415<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[100]<\/span><\/strong>Yutaka Nagahata, Hiroshi Teramoto, Chun-Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
\nReactivity boundaries for chemical reactions associated with higher index and multiple saddles<\/b>
Physical Review E <\/i> 88<\/b>(4), pp.42923-42923-11 (2013)DOI<\/a>: 10.1103\/PhysRevE.88.042923 <\/dt>
(Figure 6d from this paper was selected to be displayed on PRE journal web site as part of \"Kaleidoscope\")<\/font><\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[99]<\/span><\/strong>Hiroshi Teramoto, George Haller, Tamiki Komatsuzaki
\nDetecting invariant manifolds as stationary Lagrangian coherent structures in autonomous dynamical systems<\/b>
Chaos<\/i> 23<\/b>, pp.043107 -43107-12 (2013)DOI<\/a>: 10.1063\/1.4824314<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[98]<\/span><\/strong>Chun-Biu Li, Tamiki Komatsuzaki
\nAggregated Markov Model Using Time Series of Single Molecule Dwell Times with Minimum Excessive Information<\/b>
Physical Review Letters<\/i> 111<\/b>, pp.58301-58301-5 (2013)DOI<\/a>: 10.1103\/PhysRevLett.111.058301<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[97]<\/span><\/strong>Yutaka Nagahata, Hiroshi Teramoto, Chun-Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
\nReactivity Boundaries to Separate the Fate of a Chemical Reaction Associated with an Index-two saddle<\/b>
Physical Review E <\/i> 87<\/b>(6), pp.62817 , (2013)DOI<\/a>: 10.1103\/PhysRevE.87.062817<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[96]<\/span><\/strong>Shinnosuke Kawai, David Cooper, Christy F. Landes, Henning D. Mootz, Haw Yang, Tamiki Komatsuzaki
\nNumerical Construction of Estimators for single-molecule fluorescence measurements<\/b>
The Journal of Physical Chemistry B<\/i> 117<\/b>(27), pp.8061 , (2013)DOI<\/a>: 10.1021\/jp402328m<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[95]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nEffect of Timescale on Energy Landscape: Distinction between Free Energy Landscape and Potential of Mean Force<\/b>
Physical Review E (Rapid Communication)<\/i> 87<\/b>(3), pp.30803 , (2013)DOI<\/a>: 10.1103\/PhysRevE.87.030803<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[94]<\/span><\/strong>Tamiki Komatsuzaki
\nWish to listen to the individuality of molecules existing on biological dynamics system<\/b>
IMS Letters<\/i> 67<\/b>, pp.17, (2013)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[93]<\/span><\/strong>Tatyana Terentyeva, Johan Hofkens, Tamiki Komatsuzaki, Kerstin Blank, Chun-Biu Li
\nTime-Resolved Single Molecule Fluorescence Spectroscopy of an \u03b1-Chymotrypsin Catalyzed Reaction<\/b>
Journal of Physical Chemistry B<\/i> 117 <\/b>(5), pp.1252-1260 (2013)DOI<\/a>: 10.1021\/jp310663v<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

2012<\/h3>
[92]<\/span><\/strong>Mikito Toda, Tamiki Komatsuzaki
\nProceeding Reports on 'Dynamical Problems on Lugged Energy Landscapes IV -Survey of Intermediate Regime between Selectivity and Stochasticity'<\/b>
BUSSEI KENKYUU<\/i> 1<\/b>(3), pp.013502\u30106pages\u3011, (2012)<\/dt>
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<\/div>

<\/p>\n\n

[91]<\/span><\/strong>Kiyoto Kamagata, Toshifumi Kawaguchi, Yoshitomo Iwahashi, Akinori Baba, Kazuya Fujimoto, Tamiki Komatsuzaki, Yoshihiro Sambongi, Yuji Goto, Satoshi Takahashi
\nLong-term observation of fluorescence of free single molecules to explore protein-folding energy landscapes<\/b>
Journal of American Chemical Society<\/i> 134<\/b>(28), pp.11525-11532 (2012)DOI<\/a>: 10.1021\/ja3020555<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[90]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nLaser Control of Chemical Reactions by Phase Space Structures<\/b>
Bulletin of the Chemical Society of Japan<\/i> 85<\/b>, pp.854-861 (2012)<\/dt>
(Awarded as the BCSJ award and chosen as the cover art of the volume)<\/font><\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[89]<\/span><\/strong>Tatyana Terentyeva, Hans Engelkamp, Alan Rowan, Tamiki Komatsuzaki, Johan Hofkens, Chun Biu Li, Kerstin Blank
\nDynamic Disorder in Single Enzyme Experiments: Facts and Artifacts<\/b>
ACS Nano<\/i> 6<\/b>(1), pp.346-354 (2012)DOI<\/a>: 10.1021\/nn203669r<\/dt>
(Chosen as a highlighted article In Nano, Volume 6, issue 1(2012))<\/font><\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[88]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
\nMultidimensional Energy Landscapes in Single Molecule Biophysics<\/b>
Advances in Chemical Physics<\/i> 146<\/b>, pp.299-328 (2012)DOI<\/a>: 10.1002\/9781118131374.ch11<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[87]<\/span><\/strong>T. Komatsuzaki, S. Takahashi, M. Kawakami, Haw Yang, Robert Silbey
\n(Edition)Single Molecule Biophysics: Experiment and Theory<\/b>
Advances in Chemical Physics<\/i> 146<\/b>, (2012)DOI<\/a>: 10.1002\/9781118131374<\/dt>
John-Wiley& Sons, Inc. ISBN: 978-1-1-180-5780-3.<\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

2011<\/h3>
[86]<\/span><\/strong>Tamiki Komatsuzaki
\nMy memory of Prof. Shuichi Tasaki<\/b>
Bussei Kenkyuu (Kyoto)<\/i> 97<\/b>, pp.286-290 (2011)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[85]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
\nAdvanced Understanding of Transport Phenomena in High-dimensional Dynamical systems: Normally Hyperbolic Invariant Manifold, its Stable\/Unstable Invariant Manifolds and their Breakdown<\/b>
Bussei Kenkyu(Kyoto)<\/i> 97<\/b>, pp.547-559 (2011)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[84]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nWhy and how do systems react in thermally fluctuating environments?<\/b>
Physical Chemistry Chemical Physics (Perspective)<\/i> 13<\/b>, pp.21217-21229 (2011)<\/dt>
This paper was selected in \"Virtual Journal of Biological Physics Research \"STATISTICAL AND NONLINEAR PHYSICS\", 22(11) (2011)<\/font><\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[83]<\/span><\/strong>Naoki Miyagawa, Hiroshi Teramoto, Chun-Biu Li, Tamiki Komatsuzaki
\nDecomposability of Multivariate Interactions<\/b>
Complex Systems<\/i> 20<\/b>, pp.165-179 (2011)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[82]<\/span><\/strong>Naoki Miyagawa, Hiroshi Teramoto, Chun-Biu Li, Tamiki Komatsuzaki
\nSpatial Heterogeneity of Multivariate Dependence<\/b>
AIP Conference Proceedings ''International Conference of Numerical Analysis and Applied Mathematics 2011''<\/i> 1389<\/b>, pp.991-991 (2011)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[81]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nDerivation of the Generalized Langevin Equation in Non-stationary environments<\/b>
Journal of Chemical Physics<\/i> 134<\/b>, pp.114523, (2011)<\/dt>
This article was selected as the March 2011 issue of JCP: BioChemical Physics, 5 (3), (2011)<\/font><\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[80]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nPhase Space Geometry of Dynamics Passing through Saddle Coupled with Spatial Rotation<\/b>
Journal of Chemical Physics<\/i> 134<\/b>, pp.084304, (2011)<\/dt>
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<\/p>\n\n

[79]<\/span><\/strong>Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki
\nA Dynamical Switching of a Reaction Coordinate to Carry the System Through to a Different Product State at High Energies<\/b>
Physical Review Letters<\/i> 106<\/b>, pp.054101, (2011)<\/dt>
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<\/p>\n\n

[78]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nQuantum Reaction Boundary to Mediate Reactions in Laser Fields<\/b>
Journal of Chemical Physics<\/i> 134<\/b>, pp.024317, (2011)<\/dt>
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<\/p>\n\n

[77]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
\nExtracting the Underlying Effective Free Energy Landscape From Single-Molecule Time Series --- Local Equilibrium States and their Network<\/b>
Physical Chemistry Chemical Physics<\/i> 13<\/b>(4), pp.1395-1406 (2011)<\/dt>
This paper was selected in \"Virtual Journal of Biological Physics Research \"Single Molecule Dynamics\", 21(2) (2011)\".<\/font><\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[76]<\/span><\/strong>David M. Leitner, Yasuhiro Matsunaga, Akira Shojiguchi, Chun-Biu Li, Tamiki Komatsuzaki, Mikito Toda
\nNon-Brownian Phase Space Dynamics of Molecules, the Nature of their Vibrational States, and non-RRKM Kinetics<\/b>
Advances in Chemical Physics<\/i> 145<\/b>, pp.83-122 (2011)<\/dt>
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<\/p>\n\n

[75]<\/span><\/strong>Shinnosuke Kawai, Hiroshi Teramoto, Chun-Biu Li, Tamiki Komatsuzaki, Mikito Toda
\nDynamical Reaction Theory based on Geometric Structures of Phase Space<\/b>
Advances in Chemical Physics<\/i> 145<\/b>, pp.123-170 (2011)<\/dt>
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<\/p>\n\n

[74]<\/span><\/strong>Tamiki Komatsuzaki, Akinori Baba, Shinnosuke Kawai, Mikito Toda, John E. Straub, R. Stephen Berry
\nErgodic Problems for Real Complex Systems in Chemical Physics<\/b>
Advances in Chemical Physics<\/i> 145<\/b>, pp.171-220 (2011)<\/dt>
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<\/p>\n\n

[73]<\/span><\/strong>T. Komatsuzaki, R. S. Berry, D.M. Leitner
\n(Edition)\"Advancing Theory for Kinetics and Dynamics of Complex, Many-Dimensional Systems: Clusters and Proteins\"<\/b>
Advances in Chemical Physics<\/i> 145<\/b>, (2011)<\/dt>
ed. by T. Komatsuzaki, R. S. Berry, D.M. Leitner John-Wiley & Sons, Inc. ISBN: 978-0-470-64371-6 (2011).<\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

2010<\/h3>
[72]<\/span><\/strong>Tamiki Komatsuzaki, Chun Biu Li, Shinnosuke Kawai
\nRobustness and Diversity of Transitions in a Sea of Chaos and Stochastic Fluctuation<\/b>
AIP Conference Proceedings \"International Conference of Numerical Analysis and Applied Mathematics 2010\"<\/i> 1281<\/b>(1), pp.1582-1584 (2010)<\/dt>
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<\/p>\n\n

[71]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nDynamical Reaction Coordinate in Thermally Fluctuating Environments in the Framework of Multidimensional Generalized Langevin Equations<\/b>
Physical Chemistry Chemical Physics<\/i> 12<\/b>, pp.15382-15391 (2010)<\/dt>
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<\/p>\n\n

[70]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
\nHow does a choice of Markov partition affect the resultant symbolic dynamics?<\/b>
Chaos<\/i> 20<\/b>, pp.037113, (2010)<\/dt>
URL<\/a> Focus Issue on \"Intrinsic and Designed Computation: Information processing in dynamical Systems\" <\/font>selected as Top 20 Most Read Articles 2010<\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[69]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nRobust existence of a reaction boundary to separate the fate of a chemical reaction<\/b>
Physical Review Letters<\/i> 105<\/b>, pp.048304, (2010)<\/dt>
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<\/p>\n\n

[68]<\/span><\/strong>Yasuhiro Matsunaga, Chun Biu Li, Tamiki Komatsuzaki
\nCooperativity at different space and time scales in multiscale protein dynamics<\/b>
Physical Review E<\/i> 82<\/b>, pp.016213, (2010)DOI<\/a>: 10.1103\/PhysRevE.82.016213<\/dt>
This paper was selected in \"Virtual Journal of Biological Physics Research \"Protein Conformational Dynamics\/Folding \" 20(3) (2010)\".<\/font><\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[67]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nNonlinear Dynamical Effects on Reaction Rates in Thermally Fluctuating Environments<\/b>
Physical Chemistry Chemical Physics<\/i> 12<\/b>, pp.7636-7647 (2010)<\/dt>
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<\/p>\n\n

[66]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nHierarchy of Reaction Dynamics in a Thermally Fluctuating Environment<\/b>
Physical Chemistry Chemical Physics<\/i> 12<\/b>, pp.7626-7635 (2010)<\/dt>
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<\/p>\n\n

[65]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
\nPossible Folding Patterns of Stable\/Unstable Manifolds in Many Degrees of Freedom Hamiltonian Systems and Their Relationship with Properties of Dynamical Systems<\/b>
From Hyperbolic Systems to Many-Degrees of Freedom Dynamical Systems, RIMS Kokyuroku, Research Institute for Mathematical Sciences (RIMS)<\/i> 1688<\/b>, pp.26-38 (2010)<\/dt>
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<\/p>\n\n

2009<\/h3>
[64]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nDynamic pathways to mediate reactions buried in thermal fluctuations. I. Time-dependent normal form theory for multidimensional Langevin equation<\/b>
Journal of Chemical Physics<\/i> 131<\/b>, pp.224505 (1)-224505(11) (2009)<\/dt>
This article was selected as the December 2009 issue of JCP: BioChemical Physics, 3 (12), (2009)<\/font><\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[63]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\nDynamic pathways to mediate reactions buried in thermal fluctuations II: numerical illustrations using a model system<\/b>
Journal of Chemical Physics<\/i> 131<\/b>, pp.224506(1)-224506(9) (2009)<\/dt>
This article was selected as the December 2009 issue of JCP: BioChemical Physics, 3 (12), (2009).<\/font><\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[62]<\/span><\/strong>Chun Biu Li, Mikito Toda, Tamiki Komatsuzaki
\nBifurcation of no-return transition states in many-body chemical reactions<\/b>
Journal of Chemical Physics<\/i> 130<\/b>, pp.124116, (2009)<\/dt>
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<\/p>\n\n

[61]<\/span><\/strong>Chun Biu Li, Haw Yang, Tamiki Komatsuzaki
\nNew Quantification of Local Transition Heterogeneity of Multiscale Complex Networks Constructed from Single-Molecule Time Series<\/b>
Journal of Physical Chemistry B<\/i> 113<\/b>(44), pp.14732-14741 (2009)<\/dt>
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<\/p>\n\n

2008<\/h3>
[60]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
\nExploring Remnant of Invariants Buried in a Deep Potential Well in Chemical Reactions<\/b>
Journal of Chemical Physics<\/i> 129<\/b>, pp.094302, (2008)<\/dt>
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<\/p>\n\n

[59]<\/span><\/strong>Hiroshi Teramoto, Tamiki Komatsuzaki
\nProbing Remnants of Invariants to Mediate Energy Exchange in Highly-Chaotic Many-dimensional Systems<\/b>
Physical Review E<\/i> 78<\/b>, pp.017202, (2008)<\/dt>
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<\/p>\n\n

[58]<\/span><\/strong>Akira Shojiguchi, Chun Biu Li, Tamiki Komatsuzaki, Mikito Toda
\nErratum: Fractional Behavior in Multi-Dimensional Hamiltonian Systems Describing Reactions<\/b>
Physical Review E<\/i> 77<\/b>, pp.019902, (2008)<\/dt>
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<\/p>\n\n

[57]<\/span><\/strong>Chun Biu Li, Haw Yang, Tamiki Komatsuzaki
\nMultiscale Complex Network of Protein Conformational Fluctuation Buried in Single Molecule Time Series<\/b>
Proceedings of National Academy of Sciences USA<\/i> 105<\/b>, pp.536-541 (2008)<\/dt>
This paper was selected in \"Virtual Journal of Biological Physics Research \"Single Molecule Dynamics\", 15(3) (2008)\"<\/font><\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[56]<\/span><\/strong>Akira Shojiguchi, Chun Biu Li, Tamiki Komatsuzaki, Mikito Toda
\nDynamical Foundation and Limitations of Statistical Reaction Theory<\/b>
Communications in Nonlinear Science and Numerical Simulation<\/i> 13<\/b>, pp.857-657 (2008)<\/dt>
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<\/p>\n\n

[55]<\/span><\/strong>Tamiki Komatsuzaki
\nWhat can we learn from Single-Molecule Time Series?<\/b>
Bussei Kenkyu (Kyoto)<\/i> 91<\/b>, pp.121-130 (2008)<\/dt>
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<\/p>\n\n

[54]<\/span><\/strong>Motoi Miyazu
\nLetter from Local Branch: Hokkaido Branch of the Biophysical Society of Japan (contribute article to introduction of laboratories)<\/b>
The Biophysical Society of Japan, SEIBUTSU BUTSURI<\/i> 48<\/b>(4), pp.258-259 (2008)<\/dt>
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<\/p>\n\n

[53]<\/span><\/strong>Tamiki Komatsuzaki
\nState Transition Network Extracted from Single-Molecule Time Series<\/b>
Seibutsu Butsuri (Journal of Biophysical Society of Japan)<\/i> 48<\/b>(5), pp.282-283 (2008)<\/dt>
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<\/p>\n\n

[52]<\/span><\/strong>Yasuhiro Matsunaga, Tamiki Komatsuzaki
\nPolymer and Chaos: Anomalous Diffusion and Hierarchical Regularity<\/b>
KOUBUNSHI (Japanese society of polymer science)<\/i> 57<\/b>(2), pp.58-61 (2008)<\/dt>
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<\/p>\n\n

2007<\/h3>
[51]<\/span><\/strong>Akira Shojiguchi, Chun Biu Li, Tamiki Komatsuzaki, Mikito Toda
\nFractional Behavior in Multi-Dimensional Hamiltonian Systems Describing Reactions<\/b>
Physical Review E<\/i> 76<\/b>, pp.056205(1)-056205(14) (2007)<\/dt>
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<\/p>\n\n

[50]<\/span><\/strong>Akinori Baba, Tamiki Komatsuzaki
\nConstruction of effective free energy landscape from single molecule time series<\/b>
Proceedings of National Academy of Sciences USA<\/i> 104<\/b>(49), pp.19297-19302 (2007)<\/dt>
This paper was selected in \"Virtual Journal of Biological Physics Research \"Single Molecule Dynamics\", 14(12)(2007)\".<\/font><\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[49]<\/span><\/strong>Yasuhiro Matsunaga, Chun Biu Li, Tamiki Komatsuzaki
\nAnomalous Diffusion in Folding Dynamics on Minimalist Protein Landscape<\/b>
Physical Review Letters<\/i> 99<\/b>, pp.238103, (2007)<\/dt>
This paper was selected in \"Virtual Journal of Biological Physics Research \"Protein Conformational Dynamics\/Folding \" 14(12)(2007)\".<\/font><\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[48]<\/span><\/strong>Masahito Kinoshita, Kiyoto Kamagata, Akio Maeda, Yuji Goto, Tamiki Komatsuzaki, Satoshi Takahashi
\nDevelopment of a technique for the investigation of folding dynamics of single proteins for extended time periods<\/b>
Proceedings of National Academy of Sciences USA<\/i> 104<\/b>, pp.10453, (2007)<\/dt>
This paper was selected in \"Virtual Journal of Biological Physics Research \"Protein Conformational Dynamics\/Folding \" 14(2)(2007)\".<\/font><\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[47]<\/span><\/strong>Akira Shojiguchi, Chun Biu Li, Tamiki Komatsuzaki, Mikito Toda
\n'Fractional behavior in nonergodic reaction processes of isomerization<\/b>
Physical Review E (rapid communication)<\/i> 75<\/b>, pp.035204(R), (2007)<\/dt>
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<\/p>\n\n

[46]<\/span><\/strong>Shinnosuke Kawai, Yo Fujimura, Okitsugu Kajimoto, Takefumi Yamashita, Chun-Biu Li, Tamiki Komatsuzaki, Mikito Toda
\nDimension reduction for extracting geometrical structure of multidimensional phase space: Application to fast energy exchange in the reaction O(1D)+N2O \u2192NO+NO<\/b>
Physical Review A<\/i> 75<\/b>, pp.022714, (2007)<\/dt>
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<\/p>\n\n

[45]<\/span><\/strong>Tomohiro Shirakawa, Yukio-Pegio Gunji, T. Komatsuzaki
\nCross Talk between Planetary Science and Nonlinear Science:from Chemical Reaction to Biocomputing<\/b>
YUSEIJIN (Japanese society of planetary science)<\/i> 16<\/b>(4), pp.322-329 (2007)<\/dt>
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<\/p>\n\n

[44]<\/span><\/strong>Kazuto Sei, Tamiki Komatsuzaki
\nComplex Network extracted from Single-Molecule Time Series -Dynamic Structure on Kantorovich Metric Space<\/b>
Bussei Kenkyu (Kyoto)<\/i> , (2007)<\/dt>
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<\/p>\n\n

2006<\/h3>
[43]<\/span><\/strong>Gareth J. Rylance, Roy L. Johnston, Yasuhiro Matsunaga, Chun Biu Li, Akinori Baba, Tamiki Komatsuzaki
\nTopographical complexity of multidimensional energy landscapes<\/b>
Proceedings of National Academy of Sciences USA<\/i> 103<\/b>, pp.18551, (2006)<\/dt>
This paper was selected in \"Virtual Journal of Biological Physics Research \"Protein Conformational Dynamics\/Folding \" 12(12) (2006)\".<\/font>\n<\/b><\/dd><\/dl><\/div><\/div>
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<\/p>\n\n

[42]<\/span><\/strong>Chun Biu Li, Akira Shojiguchi, Mikito Toda, Tamiki Komatsuzaki
\nErratum: Dynamical Hierarchy in Transition States of Reactions<\/b>
Few-Body Systems<\/i> 40<\/b>, pp.129-129 (2006)<\/dt>
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<\/p>\n\n

[41]<\/span><\/strong>Chun Biu Li, Akira Shojiguchi, Mikito Toda, Tamiki Komatsuzaki
\nErratum: Definability of No-Return Transition States in the High-Energy Regime above the Reaction Threshold [Phys. Rev. Lett. 97, 028302 (2006)]<\/b>
Physical Review Letters<\/i> 97<\/b>, pp.129901, (2006)<\/dt>
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<\/p>\n\n

[40]<\/span><\/strong>Akira Shojiguchi, Akinori Baba, Chun Biu Li, Tamiki Komatsuzaki, Mikito Toda
\nWavelet Analysis and Arnold Web Picture for Detecting Energy Transfer in Hamiltonian Dynamical System<\/b>
Laser Physics<\/i> 16<\/b>(7), pp.1097-1106 (2006)<\/dt>
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<\/p>\n\n

[39]<\/span><\/strong>Chun Biu Li, Akira Shojiguchi, Mikito Toda, Tamiki Komatsuzaki
\nDefinability of No-return Transition States in High Energy Regime Above Threshold<\/b>
Physical Review Letters<\/i> 97<\/b>, pp.028302-028305 (2006)<\/dt>
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<\/p>\n\n

[38]<\/span><\/strong>Chun Biu Li, Akira Shojiguchi, Mikito Toda, Tamiki Komatsuzaki
\nDynamical Hierarchy in Transition States of Reactions<\/b>
Few-Body Systems<\/i> 38<\/b>, pp.173-179 (2006)<\/dt>
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<\/p>\n\n

[37]<\/span><\/strong>Satoshi Noda, Akinori Baba, Tamiki Komatsuzaki
\nCollective Motion of Water Field and Structural Transition Dynamics of Biomolecules<\/b>
Bussei Kenkyu (Kyoto)<\/i> 86<\/b>(1), pp.123-129 (2006)<\/dt>
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<\/p>\n\n

[36]<\/span><\/strong>Kyoko Hoshino, Y. Matusnaga, Gareth J. Rylance, Roy L. Johnston, David J. Wales, Tamiki Komatsuzaki
\nStructural Diversity of Protein Energy Landscape and New Visualization of Multidimensional Energy Landscapes<\/b>
Bussei Kenkyu (Kyoto)<\/i> 86<\/b>(1), pp.117-122 (2006)<\/dt>
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<\/p>\n\n

[35]<\/span><\/strong>Chun Biu Li, M. Toda, T. Komatsuzaki
\nGeometrical Structure buried in the Phase Space of Stochastic Structural Transition<\/b>
Bussei Kenkyu (Kyoto)<\/i> 86<\/b>(1), pp.77-81 (2006)<\/dt>
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<\/p>\n\n

[34]<\/span><\/strong>Sotaro Fuchigami, Tamiki Komatsuzaki, Mikito Toda
\nProceeding Reports on 'Dynamical Problems on Lugged Energy Landscapes I -Proteins and the surroundings'<\/b>
Bussei Kenkyu (Kyoto)<\/i> 86<\/b>(1), pp.37-154 (2006)<\/dt>
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<\/p>\n\n

2005<\/h3>
[33]<\/span><\/strong>Chun Biu Li, Yasuhiro Matsunaga, Mikito Toda, Tamiki Komatsuzaki
\nPhase Space Reaction Network on a Multisaddle Energy Landscape: HCN isomerization<\/b>
Journal of Chemical Physics<\/i> 123<\/b>, pp.184301(1)-184301(13) (2005)<\/dt>
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<\/p>\n\n

[32]<\/span><\/strong>Tamiki Komatsuzaki, Kyoko Hoshino, Yasuhiro Matsunaga, Gareth J. Rylance, Roy L. Johnston, David J. Wales
\nHow Many Dimension is Required to Approximate Potential Energy Landscape of A Model Protein?<\/b>
Journal of Chemical Physics<\/i> 122<\/b>, pp.084714(1)-084714(9) (2005)<\/dt>
This paper was selected in \"Virtual Journal of Biological Physics Research \"Protein Conformational Dynamics\/Folding \" 9(5)(2005)\".<\/font><\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[31]<\/span><\/strong>
\n(Edition)\"Geometric Structures of Phase Space in Multi-Dimensional Chaos: Applications to Chemical Reaction Dynamics in Complex Systems\"<\/b>
Advances in Chemical Physics<\/i> 130A, 130B<\/b>, (2005)<\/dt>
ed. by M. Toda, T. Komatsuzaki, T. Konishi, R. S. Berry and S. A. Rice, John-Wiley & Sons, Inc. 1224 pages<\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[30]<\/span><\/strong>Tamiki Komatsuzaki, Kyoko Hoshino, Y. Matsunaga
\nRegularity in Chaotic Transitions on Multi-Basin Landscapes<\/b>
Advances in Chemical Physics<\/i> 130<\/b>(B), pp.257-313 (2005)<\/dt>
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<\/p>\n\n

[29]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
\nRegularity in Chaotic Transitions on Two-Basin Landscapes<\/b>
Advances in Chemical Physics<\/i> 130<\/b>(A), pp.143-170 (2005)<\/dt>
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<\/p>\n\n

[28]<\/span><\/strong>Chun Biu Li, M. Toda, T. Komatsuzaki
\nChaotic Reaction Dynamics and the Phase Space Geometry of Multidimensional Chemical Reaction<\/b>
Bussei Kenkyu (Kyoto) <\/i> 84<\/b>(3), pp.481-482 (2005)<\/dt>
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<\/div>

<\/p>\n\n

2004<\/h3>
[27]<\/span><\/strong>K. Hoshino, Y. Matsunaga, M. Miller, D.J. Wales, Tamiki Komatsuzaki
\nA Coarse-Graining of Energy Landscapes of Proteins -Structural Stability of the Most Stable States-<\/b>
AIP conference series for Slow Dynamics in Complex Systems<\/i> 708<\/b>, pp.344-345 (2004)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[26]<\/span><\/strong>Y. Matsunaga, Tamiki Komatsuzaki
\nProtein Folding Dynamics: Ergodic Behavior in Principal Component Space<\/b>
AIP conference series for Slow Dynamics in Complex Systems<\/i> 708<\/b>, pp.342-343 (2004)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[25]<\/span><\/strong>Y. Matsunaga, K.S. Kostov, Tamiki Komatsuzaki
\nHierarchical Regularity in Multi-Basin Dynamics on Protein Landscapes<\/b>
AIP conference series for Slow Dynamics in Complex Systems<\/i> 708<\/b>, pp.302-305 (2004)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[24]<\/span><\/strong>Mikito Toda, Tamiki Komatsuzaki, Tetsuro Konishi, R.Stephen Berry, Stuart A. Rice
\nReport of YIYP international Symposium on Geometrical Structures of Phase Space in Multi-Dimensional Chaos: Applications to Chemical Reaction Dynamics in Complex Systems<\/b>
Bussei Kenkyu (Kyoto)<\/i> 83<\/b>, pp.176-188 (2004)<\/dt>
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<\/p>\n\n

[23]<\/span><\/strong>Yasuhiro Matsunaga
\nProtein Folding Dynamics -Anomalous diffusion and dynamical correlation-<\/b>
Bussei Kenkyu (Kyoto) (Selected Master Thesis in Japan)<\/i> 81<\/b>, pp.571-592 (2004)<\/dt>
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<\/div>

<\/p>\n\n

2002<\/h3>
[22]<\/span><\/strong>Yasuhiro Matsunaga, Konstantin S. Kostov, Tamiki Komatsuzaki
\nMulti-Basin Dynamics in Off-Lattice Minimalist Protein Landscapes<\/b>
Journal of Physical Chemistry A<\/i> 106<\/b>, pp.10898-10907 (2002)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[21]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
\nA Dynamical Propensity Rule of Transitions in Chemical Reactions<\/b>
Journal of Physical Chemistry A<\/i> 106<\/b>, pp.10945-10950 (2002)<\/dt>
(invited)<\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[20]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
\nErratum: \"Regularity in chaotic reaction paths. I. Ar6\" [J. Chem. Phys. 110, 9160 (1999)]'<\/b>
Journal of Chemical Physics<\/i> 116<\/b>, pp.862-862 (2002)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[19]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
\nChemical Reaction Dynamics: Many-Body Chaos and Regularity<\/b>
Advances in Chemical Physics<\/i> 123<\/b>, pp.79-152 (2002)<\/dt>
ed. by I. Prigogine and S. A. Rice, John-Wiley & Sons, Inc. (invited) (2002): advertisement, Book Review by Mark E. Tuckerman Journal of American Chemical Society, 125,6596-6597 (2003)<\/b><\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[18]<\/span><\/strong>Masaki Sasai, Tamiki Komatsuzaki, Mikito Toda
\nTales about Funnel -Why can Natural Proteins Fold into the Native State Uniquely and Efficiently?-<\/b>
Bussei Kenkyu (Kyoto)<\/i> 78<\/b>, pp.475-509 (2002)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[17]<\/span><\/strong>Yasuhiro Matsunaga
\nHierarchical Regularity of Protein Folding Dynamics<\/b>
Bussei Kenkyu (Kyoto)<\/i> 78<\/b>, pp.457-462 (2002)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[16]<\/span><\/strong>Tamiki Komatsuzaki
\nDeterministic Property in the (Thermally) Fluctuating World -Why does a Reacting System pass through the Saddle?<\/b>
Bussei Kenkyu (Kyoto)<\/i> 78<\/b>, pp.354-364 (2002)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[15]<\/span><\/strong>Mikito Toda, Tamiki Komatsuzaki
\nProceeding Reports on 'Dynamical Problems on Lugged Energy Landscapes II -Survey of Intermediate Regime between Selectivity and Stochasticity'<\/b>
Bussei Kenkyu (Kyoto)<\/i> 78<\/b>, pp.349-474 (2002)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[14]<\/span><\/strong>Tamiki Komatsuzaki, Yasuhiro Matsunaga
\nDynamics of Protein Folding -Abnormal Diffusion and Hierarchical Regularity<\/b>
Seibutsu Butsuri (Journal of Biophysical Society of Japan)<\/i> 42<\/b>, pp.285-289 (2002)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

2001<\/h3>
[13]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
\nRegularity in Chaotic Reaction Path III:Ar6 -Local Invariances at the Reaction Bottleneck-<\/b>
Journal of Chemical Physics<\/i> 130<\/b>, pp.4105-4117 (2001)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[12]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
\n'Dynamical Hierarchy in Transition States: Why and How Does a System Climb over the Mountain?<\/b>
Proceedings of National Academy of Sciences USA<\/i> 98<\/b>, pp.7666-7671 (2001)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[11]<\/span><\/strong>Tamiki Komatsuzaki, Mikito Toda
\nProceeding Reports on 'Dynamical Problems on Lugged Energy Landscapes I -Survey of Intermediate Regime between Selectivity and Stochasticity'<\/b>
Bussei Kenkyu (Kyoto)<\/i> 76<\/b>(1), pp.45-143 (2001)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[10]<\/span><\/strong>Tamiki Komatsuzaki
\nDeterministic Property of Chemical Reactions in the (Thermally) Fluctuating World -Solution of Recrossing Problem from 1930s-<\/b>
Bussei Kenkyu (Kyoto)<\/i> 76<\/b>(1), pp.1-44 (2001)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

2000<\/h3>
[9]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
\nLocal Regularity and Non-recrossing Path in Transition States -A New Strategy in Chemical Reaction Theories<\/b>
Journal of Molecular Structure<\/i> 506<\/b>, pp.55-70 (2000)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

1999<\/h3>
[8]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
\nRegularity in Chaotic Reaction Path II: Ar6 -Energy Dependence and Visualization of the Reaction Bottleneck-<\/b>
Physical Chemistry Chemical Physics<\/i> 1<\/b>, pp.1387-1397 (1999)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[7]<\/span><\/strong>Tamiki Komatsuzaki, R. Stephen Berry
\nRegularity in Chaotic Reaction Path I: Ar6<\/b>
Journal of Chemical Physics<\/i> 110<\/b>(18), pp.9160-9173 (1999)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

1997<\/h3>
[6]<\/span><\/strong>Kiyoshi Sawada, Fumie Chigira, Keiichi Satoh, Tamiki Komatsuzaki
\nElectronic Spectra of Ion-Pairs of Picrate Ion with Alkali Metal Polyether Complexes in Non-aqueous Solvents<\/b>
Journal of the Chemical Society, Faraday Transactions 2.<\/i> 93<\/b>(10), pp.1903-1908 (1997)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[5]<\/span><\/strong>Tamiki Komatsuzaki, Masataka Nagaoka
\nA Dividing Surface Free From a Barrier Recrossing Motion in Many-Body Systems<\/b>
Chemical Physics Letters<\/i> 265<\/b>, pp.91-98 (1997)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

1996<\/h3>
[4]<\/span><\/strong>Tamiki Komatsuzaki, Masataka Nagaoka
\nStudy on \"Regularity\" of the Barrier Recrossing Motion<\/b>
Journal of Chemical Physics<\/i> 105<\/b>, pp.10838-10848 (1996)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[3]<\/span><\/strong>Tamiki Komatsuzaki, Iwao Ohmine
\nProton Transfer in Liquid Water II; A Semiempirical Method to Describe Chemical\u3000Reactions<\/b>
Molecular Simulation<\/i> 16<\/b>, pp.321-344 (1996)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

[2]<\/span><\/strong>Tamiki Komatsuzaki, Masataka Nagaoka, Peter Hanggi
\nA Study on Near-Integrability of Recrossing Motions in Many-Body Chemical Reaction Systems<\/b>
Bussei Kenkyu (Kyoto)<\/i> 66<\/b>, pp.1039-1049 (1996)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n

1994<\/h3>
[1]<\/span><\/strong>Tamiki Komatsuzaki, Iwao Ohmine
\nEnergetics of Proton Transfer in Liquid Water I; Ab initio Study for Origin of Many-Body Interaction and Potential Energy Surfaces<\/b>
Chemical Physics, Special Issue 'dissipative dynamics'<\/i> 180<\/b>, pp.239-269 (1994)<\/dt>
<\/dd><\/dl><\/div><\/div>
<\/div>

<\/p>\n\n<\/div>\n

Books<\/h3>\n

2018<\/h3>
[14]<\/span><\/strong>Tamiki Komatsuzaki
\n<\/dt>
Minorities and Small Numbers from Molecules to Organisms in Biology-Toward a New Understanding of Biological Phenomena: Chapter 5 \"The Personality of Small Numbers: Do Molecules Have Personality?\"<\/strong><\/i> edited by Takeharu Nagai and Yuichi Togashi (Springer) DOI<\/a>10.1007\/978-981-13-2083-5<\/dd><\/dl><\/div><\/div>

<\/p>\n\n

[13]<\/span><\/strong>\u5c0f\u677e\ufa11 \u6c11\u6a39
\n<\/dt>
\u5316\u5b66\u53cd\u5fdc\u7406\u8ad6\u306e\u666e\u904d\u6027\uff1aGRRM\u306b\u671f\u3059\u308b\u3082\u306e<\/strong><\/i> (IQCE NEWS (\u91cf\u5b50\u5316\u5b66\u63a2\u7d22\u7814\u7a76\u6240)) <\/dd><\/dl><\/div><\/div>

<\/p>\n\n

2017<\/h3>
[12]<\/span><\/strong>Meysam Tavakoli, J. Nicholas Taylor, Chun-Biu Li, Tamiki Komatsuzaki, Steve Press\u00e9
\n<\/dt>
Advances in Chemical Physics: \"Single Molecule Data Analysis: An Introduction\"<\/strong><\/i> Edited by Stuart A. Rice, Aaron R. Dinner (Wiley) <\/dd><\/dl><\/div><\/div>

<\/p>\n\n

[11]<\/span><\/strong>\u5c0f\u677e\u5d0e\u6c11\u6a39
\n<\/dt>
\u5c11\u6570\u6027\u751f\u7269\u5b66\uff1a\u7b2c5\u7ae0\u300c\u5c11\u6570\u306e\u500b\u6027\uff5e\u5206\u5b50\u306b\u3082\u500b\u6027\uff1f\uff5e\u300d<\/strong><\/i> \u6c38\u4e95\u5065\u6cbb(\u7de8), \u51a8\u6a2b\u7950\u4e00(\u7de8) (\u682a\u5f0f\u4f1a\u793e\u3000\u65e5\u672c\u8a55\u8ad6\u793e) <\/dd><\/dl><\/div><\/div>

<\/p>\n\n

2016<\/h3>
[10]<\/span><\/strong>\u5bfa\u672c \u592e, \u6238\u7530 \u5e79\u4eba, \u6cb3\u91ce \u88d5\u5f66, \u9ad8\u6a4b \u6b63\u5f66, \u5c0f\u677e\u5d0e \u6c11\u6a39
\n<\/dt>
\u5316\u5b66\u53cd\u5fdc\u306e\u884c\u304d\u5148\u3092\u5909\u3048\u308b\u201c\u30b9\u30a4\u30c3\u30c1\u201d\u2500\u30a8\u30cd\u30eb\u30ae\u30fc\u306e\u4e0a\u6607\u3067\u53cd\u5fdc\u7d4c\u8def\u304c\u5207\u308a\u66ff\u308f\u308b\u65b0\u73fe\u8c61<\/strong><\/i> (\u6708\u520a\u300c\u5316\u5b66\u300d71(5)) <\/dd><\/dl><\/div><\/div>

<\/p>\n\n

2013<\/h3>
[9]<\/span><\/strong>Shinnosuke Kawai, Tamiki Komatsuzaki
\n<\/dt>
Dynamics of Chemical Reaction around a Saddle Point - What divides reacting and non-reacting trajectories?<\/i> \tin Reaction Rate Constant Computations; Theories and Applications<\/strong> edited by Keli Han and Tianshu Chu (RSC) , ISBN: 978-1-84973-650-3<\/dd><\/dl><\/div><\/div>

<\/p>\n\n

[8]<\/span><\/strong>Thomas Peacock, George Haller
\n<\/dt>
\tin Lagrangian coherent structures : the hidden skeleton of fluid flows translated<\/strong> translated by Tamiki Komatsuzaki (Parity) <\/dd><\/dl><\/div><\/div>

<\/p>\n\n

2012<\/h3>
[7]<\/span><\/strong>Tamiki Komatsuzaki
\n<\/dt>
Anthology for celebrating 50th year of Molecular Science Summer school for Young Scientists<\/i> \tin To 50th year of Molecular Science Summer school for Young Scientists<\/strong> <\/dd><\/dl><\/div><\/div>

<\/p>\n\n

[6]<\/span><\/strong>Tamiki Komatsuzaki
\n<\/dt>
Toward establishing new practical molecular theory to unveil single molecule experiments<\/i> \tin the second advanced watching survey on developing a novel transdisciplinary research field \"Molecular Science for Higher order Molecular Systems: challenges of experiments and theories\"<\/strong> , pp.31-34<\/dd><\/dl><\/div><\/div>

<\/p>\n\n

[5]<\/span><\/strong>Tamiki Komatsuzaki
\n<\/dt>
On the Occasion of Publication of Festschrift in Honour of 50th Anniversary of Summer School of Young Molecular Scientists\u2019 Association<\/i> \tin Festschrift in honour of 50th Anniversary of Summer School of Young Molecular Scientists\u2019 58<\/strong> <\/dd><\/dl><\/div><\/div>

<\/p>\n\n

2011<\/h3>
[4]<\/span><\/strong>Chun Biu Li, Tamiki Komatsuzaki
\n<\/dt>
Extracting the Underlying Unique Reaction Scheme from a Single-Molecule Time Series<\/i> \tin Cell Signaling Reactions: Single-Molecular Kinetic Analysis<\/strong> (Springer) , ISBN: 978-90-481-9863-4
(invited)<\/b><\/dd><\/dl><\/div><\/div>

<\/p>\n\n

2003<\/h3>
[3]<\/span><\/strong>Tamiki Komatsuzaki
\n<\/dt>
Dynamics of Chemical Reactions and Chaos -Revisit of Transition State Concept, Lecture Note Series<\/i> \tin the 43rd Summer School of Molecular Science<\/strong> , pp.1-56<\/dd><\/dl><\/div><\/div>

<\/p>\n\n

2002<\/h3>
[2]<\/span><\/strong> Tamiki Komatsuzaki, R.Stephen Berry
\n<\/dt>
A New Propensity Rule of Transitions<\/i> \tin Chemical Reactions: Why and How Does a Reacting System Climb over the Saddle?<\/strong> edited by Okamoto, M, Terashima, M. Toda, Tamiki Komatsuzaki, R.Stephen Berry, pp.163-167<\/dd><\/dl><\/div><\/div>

<\/p>\n\n

1994<\/h3>
[1]<\/span><\/strong>Tamiki Komatsuzaki
\n<\/dt>
Molecular Dynamics Methods including Quantum Chemical Effect<\/i> \tin The 6th extension lecture of Division of Chemical Information and Computer Science, The Chemical Society of Japan<\/strong> , pp.19-30<\/dd><\/dl><\/div><\/div>

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