Last updated : 2014/02/17

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James N. Taylor

	Specially Appointed Assistant Professor
	Molecule & Life Nonlinear Sciences Laboratory, Research Center of Mathematics for Social Creativity, Research Institute for Electronic Science Graduate School of Life Science, Transdisciplinary Life Science Course
	E-mail: Please rewrite (AT SIGN) and (DOT) as @ and .
	TEL: (011)706-9459
	FAX: (011)706-9437
	office: Research Institute for Electronic Science, 5th floor, room 203
	Mailing address: Research Institute for Electronic Science, Hokkaido University, Kita 20 Nishi 10, Kita-ku, Sapporo 001-0020, Japan

Papers

2024

[11]Koji Tabata, Hiroyuki Kawagoe, J Nicholas Taylor, Kentaro Mochizuki, Toshiki Kubo, Jean-Emmanuel Clement, Yasuaki Kumamoto, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita, Tamiki Komatsuzaki
On-the-fly Raman microscopy guaranteeing the accuracy of discrimination
Proceedings of the National Academy of Sciences of the United States of America 121(12), pp.e2304866121, (2024)
DOI: 10.1073/pnas.2304866121

2023

[10]Nicholas J. Taylor, Aurélien Pélissier, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Thomas Bocklitz, Tamiki Komatsuzaki
Correction for Extrinsic Background in Raman Hyperspectral Images
Analytical Chemistry 95(33), pp.12298-12305 (2023)
DOI: 10.1021/acs.analchem.3c01406

[9]Abdul Halim Bhuiyan, Jean-Emmanuel Clément, Zannatul Ferdous, Kentaro Mochizuk, Koji Tabata, James Nicholas Taylor, Yasuaki Kumamoto, Yoshinori Harada, Thomas Bocklitz, Katsumasa Fujita, Tamiki Komatsuzaki
Differentiability of cell types enhanced by detrending a non-homogeneous pattern in a line-illumination Raman microscope
The Analyst 148, pp.3574-3583 (2023)
DOI: 10.1039/d3an00516j

[8]Khalifa Mohammad Helal , Harsono Cahyadi, Nicholas James Taylor, Akira Okajima, Koji Tabata, Yasuaki Kumamoto, Kentaro Mochizuki, Yoshito Itoh, Tetsuro Takamatsu, Hideo Tanaka, Katsumasa Fujita , Tamiki Komatsuzaki , Yoshinori Harada
Raman imaging of rat nonalcoholic fatty liver tissuesreveals distinct biomolecular states
FEBS Letters 597(11), pp.1517-1527 (2023)
DOI: 10.1002/1873-3468.14600

2022

[7]Michiyo Hayakawa, J Nicholas Taylor, Ryuta Nakao, Kentaro Mochizuki, Yuki Sawai, Kosuke Hashimoto, Koji Tabata, Yasuaki Kumamoto, Katsumasa Fujita, Eiichi Konishi, Shigeru Hirano, Hideo Tanaka, Tamiki Komatsuzaki, Yoshinori Harada
Lipid droplet accumulation and adipophilin expression in follicular thyroid carcinoma
Biochemical and biophysical research communications 640, pp.192-201 (2022)
DOI: 10.1016/j.bbrc.2022.12.007

[6]Sulimon Sattari, Udoy S. Basak, Ryan G. James, Louis W. Perrin, James P. Crutchfield, Tamiki Komatsuzaki
Modes of information flow in collective cohesion
Science Advances 8(6), (2022)
DOI: 10.1126/sciadv.abj1720

2019

[5]Khalifa Mohammad Helal, James Nicholas Taylor, Harsono Cahyadi, Akira Okajima, Koji Tabata, Yoshito Itoh, Hideo Tanaka, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Raman spectroscopic histology using machine learning for nonalcoholic fatty liver disease
FEBS Letters 593, pp.2535-2544 (2019)
DOI: 10.1002/1873-3468.13520: File

[4]J. Nicholas Taylor, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
High-Resolution Raman Microscopic Detection of Follicular Thyroid Cancer Cells with Unsupervised Machine Learning
The Journal of Physical Chemistry B 123(20), pp.4358-4372 (2019)
DOI: 10.1021/acs.jpcb.9b01159

2018

[3]James Nicholas Taylor, Menahem Pirchi, Gilad Haran, Tamiki Komatsuzaki
Deciphering hierarchical features in the energy landscape of adenylate kinase folding/unfolding
The Journal of Chemical Physics 148, pp.123325-1-123325-14 (2018)
DOI: 10.1063/1.5016487

2015

[2]J. N. Taylor, C.-B. Li, D. Cooper, C. F. Landes, T. Komatsuzaki
Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series
Scientific Reports 5, pp.9174-1-9174-9 (2015)
DOI: 10.1038/srep09174

2014

[1]B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, J. Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis
The Journal of Physical Chemistry Letters 5, pp.3157-3161 (2014)
DOI: 10.1021/jz501435p

Presentation

2024

[31]Ryoya Kondo, Yuta Mizuno, J. Nicholas Taylor, Jean-Emmanuel Clement, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Raman histology with information theoretic assessments based on chemo-spatial information: Biomedical Raman Imaging (BRI) Workshop 2024(11.25-11.27 ,2024), Osaka University, Suita 11, 26 (Poster)

[30]Koji Tabata, Hiroyuki Kawagoe, Toshiki Kubo, James N. Taylor, Kentaro Mochizuki, Jean-Emmanuel Clement, Yasuaki Kumamoto, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita, Tamiki Komatsuzaki
Fast and accurate discrimination high-speed Raman imaging combined with multi-armed bandit algorithm in reinforcement learning: Proc. SPIE 12853, High-Speed Biomedical Imaging and Spectroscopy IX(3.12-3.12 ,2024) 3, 12

[29]Koji Tabata, Hiroyuki Kawagoe, Toshiki Kubo, James N. Taylor, Kentaro Mochizuki, Jean-Emmanuel Clement, Yasuaki Kumamoto, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita, Tamiki Komatsuzaki
Fast and accurate discrimination high-speed Raman imaging combined with multi-armed bandit algorithm in reinforcement learning: SPIE Photonics West(1.27-2.1 ,2024), The Moscone Center, San Francisco, California, USA 1, 28 (Oral)

[28]Toshiki Kubo, Koji Tabata, Hiroyuki Kawagoe, James Taylor, Jean-Emmanuel Clement, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita, Tamiki Komatsuzaki
On-the-fly slit-scanning confocal Raman microscope guaranteeing the accuracy of discrimination: SPIE Photonics West(1.27-2.1 ,2024), The Moscone Center, San Francisco, California, USA 1, 27 (Invited, Oral)

2023

[27]Ryoya Kondo, J. Nicholas Taylor, Yuta Mizuno, Jean-Emmanuel Clement, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Use of Spatial Chemical Heterogeneity for Raman Histology: An Information Theoretical Analysis: The 24th RIES-HOKUDAI International Symposium(12.6-12.7 ,2023), Akira Suzuki Hall, Sapporo 12, 6 (Poster)

[26]Ryoya Kondo, James Nicholas Taylor, Yuta Mizuno, Jean-Emmanuel Clement, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Raman Histology: Information Theoretical Evaluation of Disease State Based on Chemical-Spatial Information: Biomedical Raman Imaging 2023(6.25-6.27 ,2023), Emory University, Atlanta, Georgia, USA 6, 25-26 (Poster)

2022

[25]Jean-Emmanuel Clement, Zannatul Ferdous, James Nicholas Taylor, Koji Tabata, Yoshinori Harada, Masami Tsuda, Shinya Tanaka, Jian Ping Gong, Katsumasa Fujita, Tamiki Komatsuzaki
Gaussian Weighted Background Correction for Raman images: 19th European Conference on the Spectroscopy of Biological Molecules(8.29-9.1 ,2022), University of Reims Champagne-Ardenne, Reims, France 8, 31 (Oral)

[24]Tamiki Komatsuzaki, Koji Tabata, Hiroyuki Kawagoe, James Nicholas Taylor, Kentaro Mochizuki, Toshiki Kubo, Jean-Emmanuel Clement, Yasuaki Kumamoto, Yoshinori Harada, Atsuyoshi Nakamura, Katsumasa Fujita
On-the-fly Raman image microscopy by reinforcement machine learning: SPIE Photonics Europe 2022(4.3-4.7 ,2022), Palais de la Musique et des Congrès, Strasbourg, France 4, 5 (Invited, Oral)

2021

[23]Zannatul Ferdous, Jean-Emmanuel Clement, James Nicholas Taylor, Koji Tabata, Yoshinori Harada, Masami Tsuda, Shinya Tanaka, Jian Ping Gong, Katsumasa Fujita, Tamiki Komatsuzaki
Gaussian Weighted Background Correction Scheme for Hyperspectral Raman Data Preprocessing: The 22nd RIES-HOKUDAI International Symposium(12.6-12.7 ,2021), Online 12, 6 (Poster)

[22]Tamiki Komatsuzaki , Koji Tabata, Hiroyuki Kawagoe, James Nicholas Taylor , Kentaro Mochizuki , Jean-Emmanuel Clement , Yasuaki Kumamoto , Atsuyoshi Nakamura , Yoshinori Harada , Katsumasa Fujita
On-the-fly Raman image microscopy by reinforcement machine learning: FACSS SciX 2021(9.26-10.1 ,2021), Rhode Island Convention Center, Providence, RI, USA 9, 30 (Invited, Oral)

2020

[21]Abdul Halim Bhuiyan, Jean-emmanuel Clément, Kentaro Mochizuki, James Nick Taylor, Koji Tabata, Yuta Mizuno, Atsuyoshi Nakamura, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
To classify Raman spectra using Deep Learning Approach: The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12, 10 (Poster)

[20]Ryoya Kondo, James N Taylor, Jean-emmanuel Clément, Yuta Mizuno, Katsumasa Fujita, Yoshinori Harada, Tamiki Komatsuzaki
Classification of Spectra in Raman Microscopic Image by Chemical Heterogeneity: The 21st RIES-HOKUDAI International Symposium(12.10-12.11 ,2020), Online, Sapporo 12, 10 (Poster)

2019

[19]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Microscopic Histology using Ensemble Learning for Non-alcoholic Fatty Liver Disease: The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)

[18]J. Nicholas Taylor, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki
High Resolution Raman Microscopic Detection of Follicular Thyroid Cancer Cells with Unsupervised Machine Learning: The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)

[17]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Hyperspectral Image Analysis Using Ensemble Learning for Non-alcoholic Fatty Liver Disease: Biomedical Raman Imaging 2019(11.24-11.26 ,2019), Icho Kaikan, Suita Campus, Osaka University, Osaka, Japan 11, 25 (oral)

2018

[16]J. Nicholas Taylor, Kentaro Mochizuki, Katsumasa Fujita, Tamiki Komatsuzaki
Data-Driven Analysis of Raman Microscopic Images of Human Follicular Thyroid Cells: The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12, 11 (Poster)

[15]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Information-theoretical Approaches to Raman Microscopic Images to Predict Non-alcoholic Fatty Liver Disease: The 19th RIES-HOKUDAI International Symposium(12.11-12.12 ,2018), Jozankei View Hotel, Sapporo, Hokkaido 12, 11 (Poster)

2017

[14]J. Nicholas Taylor, Tamiki Komatsuzaki
Apparent Nonequilibrium Behavior in Single-Molecule FRET Time-Series Induced by Photophysics: The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11, 30 (Poster)

[13]Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yauaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki
Raman Microscopic Image Analysis based on Information-theoretic Approach: The 18th RIES-Hokudai International Symposium(11.30-12.1 ,2017), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 11, 30 (Poster)

2016

[12]J.N. Taylor, Chun-Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-Driven Approaches to Raman Microscopic Image Analysis: The 17th RIES-Hokudai International Symposium(12.13-12.14 ,2016), Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido 12, 13 (Poster)

[11]J. Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images: The Biophysical Society 2016 BPS Annual Meeting(2.27-3.2 ,2016), Los Angeles Convention Center, Los Angeles, USA 2, 27 (oral)

2015

[10]Nick Taylor, Almar F. Palonpon, Chun Biu Li, Katsumasa Fujita, Tamiki Komatsuzaki
Data-driven quantification of heterogeneous microenvironments in live-cell Raman microscopic images: Symposium #121 Deciphering molecular complexity from protein functions to cellular network (The 2015 International Chemical Congress of Pacific Basin Societies)(12.15-12.16 ,2015), Convention Center, Hawaii, USA 12, 16 (oral)

[9]Nick Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series: The Complexity of Dynamics Kinetics from Single Molecules to Cells(6.14-6.18 ,2015), Telluride Elementary School, Telluride, CO, U.S. 6, 18 (Oral)

[8]B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis: 2015 Oil & Gas High Performance Computing Workshop(3.4-3.5 ,2015), BioScience Research Collaborative (BRC) Building, Rice University, Houston, USA 3, 5 (poster)

[7]Bo Shuang, David Cooper, J. Nick Taylor, Lydia Kisley, Jixin Chen, Wenxiao Wang, Chun Biu Li, Tamiki Komatsuzaki, Chrisy Landes
Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis: The 2015 Quantitative BioImaging Conference(1.7-1.9 ,2015), Institut Pasteur, Paris, France (poster)

2014

[6]J.N. Taylor, Chun Biu Li, David R. Cooper, Christy F. Landes, Tamiki Komatsuzaki
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series: The 15th Ries-Hokudai International Symposium 響[hibiki](12.16-12.17 ,2014), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Hokkaido 12, 16 (poster)

[5]Nick Taylor
Extracting Free Energy Landscapes from Noisy Single-Molecule: Workshop "What kinds of dynamical feature can we extract from data?"(8.27-8.28 ,2014), Niseko town center, Niseko, Hokkaido 8, 27 (oral)

[4]Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series: Macromolecular dynamics: structure, function and diseases(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 7, 3 (oral)

[3]Nick Taylor
Error-based Extraction of Effective Free Energy Landscapes from Experimental Single-Molecule Time-Series: ICBP 8th IUPAP international conference on biological physics(6.15-7.11 ,2014), Kavli Institute for Theoretical Physics China, Beijing, China 6, 21 (oral)

2013

[2]J. N. Taylor, Chun Biu Li, Shinnosuke Kawai, Tamiki Komatsuzaki
An Information-Theoretical Approach to Local Equilibrium State Analysis for Single-Molecule Time-Series: The 14th RIES-HOKUDAI International Symposium 網[mou](12. 11-12. 12 ,2013), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Japan 12, 11 (poster)

[1]James N. Taylor, Shinnosuke Kawai, Chun Biu Li, Tamiki Komatsuzaki
Let Systems Tell for themselves: Energy Landscape and Complex Network: G3meeting,Academia Sinica(10.21-10.23 ,2013), Taipei, Taiwan