ACCESS
Molecule & Life Nonlinear Sciences Laboratory
Research Center of Mathematics for Social Creativity
Research Institute for Electronic Science (RIES)
Hokkaido University
Kita 20 Nishi 10, Kita-ku, Sapporo 001-0020, Japan
Email:
tamiki( at )es.hokudai.ac.jp
NEWS
- 2024-03-20
- Professor Tabata's research results from JST/CREST have been published in PNAS" (As reported in the Nikkan Kogyo Shimbun, "Cell diagnosis and other processes are accelerated by thousands of times through the introduction of AI technology into spectroscopic measurements" on March 20, 2024).
- 2024-03-18
- The invited review article by Sattari et al has been published in Special Issue: Singularity Biology and Beyond in Biophysics and Physicobiology.
- 2024-03-13
- Assistant Professor Jean-Emmanuel Clement received the Serendipity Innovator Award at Serendipity Symposium
- 2023-12-05
- Published in Nature Chemistry: ”Subdomain dynamics enable chemical chain reactions in non-ribosomal peptide synthetases”(See Xun's Springer Nature Research Communities)
- 2023-09-25
- The title of Research Fellow from Hokkaido University, Research Institute for Electronic Science, was granted to Prof. Mikito Toda
- 2022-12-21
- Collaboration research by Zannatul Ferdous with Prof. Tsuda and Prof. Tanaka at Faculty of Medicine was published in BBRC
- 2022-11-30
- Published in Cancers: ”ERK MAP Kinase Signaling Regulates RAR Signaling to Confer Retinoid Resistance on Breast Cancer Cells”
- 2021-05-15
- Invited paper by Udoy S. Basak, Sulimon Sattari, Md. Motaleb Hossain, Kazuki Horikawa, Tamiki Komatsuzaki, ”Transfer entropy dependent on distance among agents in quantifying leader-follower relationships” was published in Biophysics and Physicobiology
- 2021-03-26
- Professor Tabata’s paper will be adopted. He will give a lecture at PAKDD MLMEIN Workshop. He will be on the stage as a panelist on information measurement.(2021.5.11)
- 2021-03-19
- 【3/19 11:30~】 We will hold Hitachi Hokudai Lab. and Hokkaido University Contest 2020 “Future Autonomous Distributed City Development" Awards Ceremony. Please join from zoom link for free.
- 2021-01-05
- Dr. Jean-Emmanuel CLEMENT (JSPS Postdoctoral Fellow) was promoted as WPI- ICReDD Specially Appointed Assistant Professor
- 2020-12-24
- Paper by Dr. Taylor was introduced in "J. Phys. Chem. B 2019, 123, 20, 4358–4372". "FEBS letters 593.18 (2019): 2535-2544"がLaser & Photonics Reviews". "Decoding Optical Data with Machine Learning" by Jie Fang, Anand Swain, Rohit Unni, and Yuebing Zheng.
- 2020-08-01
- Hiroshi Uchigaito, Tomoki Shirai, Yoichi Iwata, Normann Mertig, Yuya Sugie, Tsubasa Oizumi, Hiroshi Teramoto, Atsuyoshi Nakamura, Shin-ichi Minato, Tamiki Komatsuzaki, and Takashi Takemoto, Minimizing customer waiting time with a new delivery-tour planning algorithm based on tour division and dynamic route optimization, accepted for presentation in International Symposium on Nonlinear Theory and Its Applications (NOLTA2020).
Topics
- 2019-09-27
- The article “K. M. Helal, J. N. Taylor, H. Cahyadi, A. Okajima, K. Tabata, Y. Itoh, H. Tanaka, K. Fujita, Y. Harada, T. Komatsuzaki, Raman spectroscopic histology using machine learning for nonalcoholic fatty liver disease, FEBS Lett. 593(18) (2019) 2535-2544”, has been selected as editor’s choice . The cover art of this volume of FEBS Letters is taken from this article.
- 2019-09-20
- The office of WPI-ICReDD updated Prof. Komatsuzaki’s researcher profile with the video explaining that nature does not know any boundaries in science.
- 2018-10-08
- Institute for Chemical Reaction Design and Discovery, Hokkaido University was chosen as the World Premier International Research Center (WPI) .
- 2018-10-01
- The academic-industrial alliance by Hokkaido University – Kyoto University – Hitachi.Ltd based JST/CREST application which involves collaborative research between Hokkaido University and Hitachi.Ltd which was led by Prof. Komatsuzaki was chosen as one of the research projects starting from 2018. [Steering Toward Spatio-Temporal Computing Architecture Driven by Learning/Math-Scientific Models (Research Director: Prof. Masato Motomura) ]
- 2018-07-19
- “Press release” of Dr. Sosuke Ito’s paper in Physical Review Letters from Hokkaido University
- 2017-09-28
- Prof. Tamiki Komatsuzaki was chosen as one of the Program Committee of DSAA2017 – The 4th IEEE International Conference on Data Science and Advanced Analytics”Special Session on Advanced Informatic Measurement using Statistics, Machine Learning and Pattern Recognition (AimSMLPR) “.
- 2016-07-12
- “Press release” of Dr. Satoru Tsugawa’s paper in Developmental Cell from Hokkaido University
- 2016-01-08
- “Press release” of Dr. Chun-Biu Li’s paper in Nature Communications from Hokkaido University
- 2015-10-26
- Mr. Yutaka Nagahata received Best Poster Award at The 9th Annual Meeting of Japan Society for Molecular Science.
- 2015-06-04
- Mr. Yutaka Nagahata received Best Poster Prize at 31st Symposium on Chemical Kinetics and Dynamics.
- 2015-03-18
- “Press release” of Dr. J. Nicholas Taylor’s paper in Scientific Reports from Hokkaido University
- 2014-12-17
- Mr. Yutaka Nagahata received Poster Award at The 15th Ries-Hokudai International Symposium 響[hibiki].
- 2014-10-31
- Prof. Tamiki Komatsuzaki was commended for his outstanding work as a reviewer of JSPS Committee on Grants-in-Aid for Scientific Research to screen written applications from a specialized viewpoint.
- 2014-03-11
- Mr. Yutaka Nagahata received Presentation Award at the Meeting of Hokkaido Branch of the Biophysical Society of Japan.
- 2013-11-05
- Mr. Yutaka Nagahata’s Figure in “Y. Nagahata, et al. Phys. Rev. E 88, 042923 (2013)” was selected as Physical Review E Kaleidoscope Images: October 2013
- 2012-09-03
- Yutaka Nagahata received Best Question award at Summer School for the Organization of Young Biophysicists
- 2012-06-01
- Dr. Shinnosuke Kawai’s Bulletin of the Chemical Society of Japan article was turned out to give him the BCSJ award
- 2012-04-12
- Dr. Shinnosuke Kawai received CSJ Presentation award 2012 at Annual Conference of Chemical Society of Japan
Publications
- 2021.05.17
- Invited Paper by Udoy S. Basak, Sulimon Sattari, Md. Motaleb Hossain, Kazuki Horikawa, Tamiki Komatsuzaki, ”Transfer entropy dependent on distance among agents in quantifying leader-follower relationships” was published in Biophysics and Physicobiology
- 2020.12.14
- Udoy S. Basak, Sulimon Sattari, Kazuki Horikawa, Tamiki Komatsuzaki “Erratum: Inferring domain of interactions among particles from ensemble of trajectories” was published
- 2020.07.09
- Udoy S. Basak, Sulimon Sattari, Kazuki Horikawa, and Tamiki Komatsuzaki, “Inferring domain of interactions among particles from ensemble of trajectories” was published
- 2020.03.24
- Tamiki Komatsuzaki, Haruki Nakamura, Jeremy Tame, Saeko Yanaka, Takeharu Nagai & Kuniaki Nagayama , “Editorial for the Special Issue of Biophysical Reviews focused on the Biophysical Society of Japan with select scientific content from the 57th BSJ annual meeting, Miyazaki, Japan” was published
- 2019.10.30
- Koji Tabata, Atsuyoshi Nakamura, Junya Honda, Tamiki Komatsuzaki, “A bad arm existence checking problem: How to utilize asymmetric problem structure?” was published
- 2019.09.27
- The article “K. M. Helal, J. N. Taylor, H. Cahyadi, A. Okajima, K. Tabata, Y. Itoh, H. Tanaka, K. Fujita, Y. Harada, T. Komatsuzaki, Raman spectroscopic histology using machine learning for nonalcoholic fatty liver disease, FEBS Lett. 593(18) (2019) 2535-2544”, has been selected as editor’s choice . The cover art of this volume of FEBS Letters is taken from this article.
- 2018.11.15
- Tamiki Komatsuzaki Minorities and Small Numbers from Molecules to Organisms in Biology-Toward a New Understanding of Biological Phenomena: Chapter 5 “The Personality of Small Numbers: Do Molecules Have Personality?” edited by Takeharu Nagai and Yuichi Togashi (Springer) was published.
- 2018.07.18
- Sosuke Ito, “Stochastic thermodynamic interpretation of information geometry” was published
- 2018.01.24
- James Nicholas Taylor, Menahem Pirchi, Gilad Haran, Tamiki Komatsuzaki, “Deciphering hierarchical features in the energy landscape of adenylate kinase folding/unfolding”, The Journal of Chemical Physics was published.
- 2017.12.12
- Yuji Tamiy, Rikiya Watanabe, Hiroyuki Noji, Chun-Biu Li, Tamiki Komatsuzaki, “Effects of non-equilibrium angle fluctuation on F1-ATPase kinetics induced by temperature increase”, Physical Chemistry Chemical Physics was published.
- 2017.11.20
- Nathan Hervieux, Satoru Tsugawa, Antoine Fruleux, Mathilde Dumond, Anne-Lise Routier-Kierzkowska, Tamiki Komatsuzaki, Arezki Boudaoud, John C. Larkin, Richard S. Smith, Chun-Biu Li, Olivier Hamant, “Mechanical Shielding of Rapidly Growing Cells Buffers Growth Heterogeneity and Contributes to Organ Shape Reproducibility”, Current Biology was published.
- 2017.11.20
- Yuichi Togashi, Soya Shinkai, Tamiki Komatsuzaki, “特集:少数性生物学ってなんだ?: 「少数と個性―分子の数と生命らしさ」”, Experimental Medicine was published.
- 2017.09.25
- Tamiki Komatsuzaki, “Advances in Chemical Physics: “Single Molecule Data Analysis: An Introduction”” was published
- 2017.09.05
- Sosuke Ito and Takahiro Sagawa, “ネットワーク上の情報熱力学とその生体情報処理への応用”, The Nihon Butsuri Gakkaishi was published
- 2017.07.24
- Jonas Alfermann, Xun Sun, Florian Mayerthaler, Thomas E. Morrell, Eva Dehling, Gerrit Volkmann, Tamiki Komatsuzaki, Haw Yang, and Henning D. Mootz, “FRET monitoring of a nonribosomal peptide synthetase”, Nature Chemical Biology was published
Organizations
- 2019.09.24
- Prof. Komatsuzaki is going to hold the workshop: 【Workshop】International & Interdisciplinary Workshop on Chemical Reaction Dynamics—Mathematics Informatics, and Physics Meet Chemistry, Oct. 08(tue), 2019, ICReDD Salon (02-106, CRIS building), Hokkaido University
- 2019.06.16
- Prof. Komatsuzaki held the workshop: The Complexity of Dynamics and Kinetics from Single Molecules to Cells, (6.16-6.20 ,2019), Telluride Intermediate School, Telluride, CO. USA
- 2019.03.26
- Dr. Teramoto held the workshop: AIMaPワークショップ「⾮ノイマン型計算、理論と応⽤」, (3.26 ,2019), 北海道大学電子科学研究所, 北海道札幌市
- 2019.03.15
- Prof. Komatsuzaki held the workshop: 北大・日立新概念コンピューティングコンテスト 2018 表彰式, (3.15 ,2019), 福岡大学七隈キャンパス, 福岡県福岡市
- 2019.02.25
- Prof. Komatsuzaki held the workshop: シンギュラリティ生物学デザイン思考研究会, (2.23-2.25 ,2019), THE HAMANAKO, 静岡県浜松市
- 2017.12.01
- Dr. Teramoto held the workshop: The 18th RIES-HOKUDAI International Symposium 極 [kyoku] joint with the 2nd International Symposium of Dynamic Alliance for Open Innovation Bridging Human, Environment and Materials, (11.30-12.1 ,2017), CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, Hokkaido
- 2017.09.08
- Prof. Komatsuzaki held the workshop: Deciphering complex energy landscape and kinetic network from single molecules to cells: a new challenge to make theories meet experiments, (9.3-9.8 ,2017), Hotel Mercure Dijon, Dijon, France
- 2017.06.24
- Prof. Komatsuzaki held the workshop: The Complexity of Dynamics and Kinetics from Single Molecules to Cells, (6.20-6.24 ,2017), Telluride Intermediate School, Telluride, CO. USA
- 2015.11.25
- Prof. Komatsuzaki held the workshop: Theory of Gas Phase Scattering and Reactivity for Astrophysics 11.23-12.8 2015
- 2015.08.07
- Dr. Teramoto held the workshop: Geometry of Chemical Reaction Dynamics in Gas and Condensed Phases 7.27-8.7 2015
- 2015.07.15
- Prof. Komatsuzaki is going to hold the workshop: Deciphering molecular complexity from protein functions to cellular network in December 15-16, 2015
- 2015.06.22
- The workshop proposed by Dr. Teramoto was accepted by Ministry of Education (CSFI develop and practice interdisciplinary education program integrate insurance and financial into the mathematical principle).
- 2015.06.14
- Prof. Komatsuzaki held the collaborative work shop “The Complexity of Dynamics and Kinetics from Single Molecules to Cells”
- 2015.06.03
- Prof. Komatsuzaki held the workshop: the 31st Symposium on Chemical Kinetics and Dynamics
- 2014.12.12
- We organized The 2nd International Symposium on Ambitious Leader’s Program for Fostering Future Leaders to Open New Frontiers in Materials Science “Ambition Across the Disciplines” at Akira Suzuki Hall, Frontier Research in Applied Sciences Building, Hokkaido University, Sapporo, Sapporo, Hokkaido
Presentations (domestic)
- 2019.06.04
- Hiroshi Teramoto presented his research.
- 2019.05.29
- Tamiki Komatsuzaki presented their research.
- 2019.03.26
- Hiroshi Teramoto presented his research.
- 2018.07.02
- Tamiki komatsuzaki presented his research.
- 2018.05.31
- Hiroshi Teramoto presented his research.
- 2018.05.30
- Sosuke Ito presented his research.
- 2018.05.23
- Tamiki komatsuzaki presented his research.
- 2018.04.20
- Tamiki komatsuzaki presented his research.
- 2018.04.13
- Sulimon Sattari presented their research.
- 2018.04.13
- J. Nicholas Taylor presented his research.
- 2017.12.22
- Hiroshi Teramoto presented his research.
- 2017.12.18
- Koji Tabata presented his research.
- 2017.12.07
- Tamiki komatsuzaki presented his research.
- 2017.11.13
- Tamiki komatsuzaki presented his research.
- 2017.11.12
- Sosuke Ito presented his research.
- 2017.11.09
- Koji Tabata presented their research.
- 2017.10.06
- Hiroko Yamada presented her research.
- 2017.10.06
- Sosuke Ito presented his research.
- 2017.09.29
- Sosuke Ito presented his research.
- 2017.09.24
- Hiroshi Teramoto presented their research.
Presentations (international)
- 2020.07.31
- Tamiki Komatsuzaki: “On-the-fly Raman image microscopy by reinforcement machine learning: How to accelerate the measurement?”, SCIX2020 Oct 12-15 Nevada USA (invited) (cancelled because of On-Demand presentation)
- 2020.05.04
- Tamiki Komatsuzaki: “Geometrical aspect of chemical reaction dynamics in thermally fluctuating environments and Future Directions”, Chaos Indicators, Phase Space and Chemical Reaction Dynamics(5.4-5.6 ,2020), University of Bristol, UK (held online) 5, 4 (invited, oral)
- 2019.12.02
- Udoy. S Basak, Sulimon Sattari, Tamiki Komatsuzaki: “An Information-theoretic approach to identify the interaction radius of a group of collectively moving animals”, The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)
- 2019.12.02
- Hiroshi Teramoto, Yutaro Kabata, Kenta Hayano, Naoki Hamada: “Type of singularity that can appear in Pareto set”, The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)
- 2019.12.02
- Sulimon Sattari, Udoy Basak, Sky Nicholson, Jason Green, Mikito Toda, Tamiki Komatsuzaki: “A sandbox model system for analyzing leadership in collective motion”, The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)
- 2019.12.02
- Koji Tabata, Atsuyoshi Nakamura, Tamiki Komatsuzaki: “Bad Arm Existence Checking Algorithm with Bandit Feeedback”, The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)
- 2019.12.02
- Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki: “Raman Microscopic Histology using Ensemble Learning for Non-alcoholic Fatty Liver Disease”, The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)
- 2019.12.02
- J. Nicholas Taylor, Kentaro Mochizuki, Kosuke Hashimoto, Yasuaki Kumamoto, Yoshinori Harada, Katsumasa Fujita, Tamiki Komatsuzaki: “High Resolution Raman Microscopic Detection of Follicular Thyroid Cancer Cells with Unsupervised Machine Learning”, The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)
- 2019.12.02
- Jean-Emmanuel Clement, Shunsuke Ono, Kentaro Mochizuki, Katsumasa Fujita, Tamiki Komatsuzaki: “Raman Imaging for Exploring Cancer Metabolism”, The 20th RIES-HOKUDAI International Symposium(12.2-12.3 ,2019), Hokkaido University, Sapporo, Japan 12, 2 (Poster)
- 2019.11.26
- Tamiki Komatsuzaki: “On-the-fly Raman image microscopy by reinforcement machine learning”, Biomedical Raman Imaging 2019(11.24-11.26 ,2019), Icho Kaikan, Suita Campus, Osaka University, Osaka, Japan 11, 26 (invited, oral)
- 2019.11.25
- Jean-Emmanuel Clement, Shunsuke Ono, Kentaro Mochizuki, Katsumasa Fujita, Tamiki Komatsuzaki: “Accelerated Raman hyperspectral imaging for cancer diagnosis”, Biomedical Raman Imaging 2019(11.24-11.26 ,2019), Icho Kaikan, Suita Campus, Osaka University, Osaka, Japan 11, 25 (oral)
- 2019.11.25
- Khalifa Mohammad Helal, Harsono Cahyadi, J. Nicholas Taylor, Akira Okajima, Yasuaki Kumamoto, Hideo Tanaka, Yoshinori Harada, Tamiki Komatsuzaki: “Raman Hyperspectral Image Analysis Using Ensemble Learning for Non-alcoholic Fatty Liver Disease”, Biomedical Raman Imaging 2019(11.24-11.26 ,2019), Icho Kaikan, Suita Campus, Osaka University, Osaka, Japan 11, 25 (oral)
- 2019.10.31
- Tamiki Komatsuzaki: “Causal inference in Leader-follower relationship”, ICSB 2019: Singularity Biology: small elements change the function of the whole systems(10.31 ,2019), Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 10, 31 (oral)
- 2019.10.21
- Hiroshi Teramoto: “Classification of band crossing geometries, their invariants and bifurcations”, 6th International Workshop on Singularities in Generic Geometry and its Applications(10.21-10.25 ,2019), Campus de Burjassot of the Universitat de València, València 10, 21 (oral)
- 2019.09.13
- Hiroshi Teramoto: ”Automation algorithms of classification of singularities, current status and future perspectives”, Singularity Theory and its Applications in Differential Equations and Differential Geometry(9.8-9.14 ,2019), Lomonosov Moscow State University, Department of Mechanics and Mathematics, Moscow 9, 13 (oral)
- 2019.08.02
- Hiroshi Teramoto:”Classification, bifurcation and invariants of band crossings in terms of singularity theory”, Progress in the Mathematics of Topological States of Matter(7.29-8.2 ,2019), AIMR, Tohoku University, Sendai, Japan 8, 2 (Invited, Oral)
- 2019.07.03
- Yuta Mizuno: “A diagrammatic approach to understanding complicated nonadiabatic chemical reaction dynamics”, XV INTERNATIONAL WORKSHOP ON QUANTUM REACTIVE SCATTERING (QRS2019 workshop)(7.1-5, 2019), Saitama University, Saitama, Japan 7, 3(oral)
- 2019.06.19
- Jean-Emmanuel Clement: “Reflection about Surface Enhanced Raman Spectroscopy”, The Complexity of Dynamics and Kinetics from Single Molecules to Cells(6.15-6.20 ,2019), Telluride Intermediate School, Telluride, CO. USA 6, 19(oral)
People & Visitors
- 2022.04.01
- Yoshihiro Matsunaga (Postdoctoral Fellow), Ryosuke Takami (M1), Shunta Nonaga (B4), and Kazuya Noto (B4) joined our lab.
- 2021.10.01
- Joshua ARRENSON (Postdoctoral Fellow) joined our lab.
- 2021.09.28
- Mohammad ALI joined our lab.
- 2019.10.01
- Mikhail TSITSVERO(WPI-ICReDD Specially Appointed Assistant Professor) and Yutaka Nagahata(Postdoctoral Fellow)joined our lab.
- 2019.07.12
- Dr. Md Motaleb Hossain(foreign cooperation researcher) joined our laboratory
- 2019.06.14
- Prof. Yoshinori Harada at Kyoto Prefectural University of Medicine visited our laboratory.
- 2019.05.01
- Mr Abdul Halim BHUIYAN was appointed as research fellow.
- 2019.04.01
- Dr Yuta Mizuno was appointed as WPI postdoctoral research fellow.
- 2019.03.31
- Mr. AURELIEN PELISSIER completed his term of office and will start his master’s course at ETH Zurich.
- 2019.03.25
- Mr. Mikoto Takigawa graduated from the Department of Chemistry, Faculty of Science.
- 2019.03.01
- Dr. Asahi Tsuchida was promoted to Assistant Professor, Warsaw University of Technology.
- 2019.01.22
- Dr. Yuta Mizuno (JSPS Research Fellow) and Ms. Saki Miyashita (undergraduate student) joined our laboratory
- 2018.12.01
- Dr. Sosuke Ito was promoted to Lecturer, Universal Biology Institute, Graduate School of Science, The University of Tokyo.
- 2018.11.14
- Dr Jean-Emmanuel CLEMENT was appointed as JSPS Postdoctoral Fellow and Ms Matsue KOIDA was appointed as secretary.
- 2018.10.01
- Mr AURELIEN PELISSIER was appointed as research fellow.
- 2018.04.01
- Mr. Mikoto Takigawa joined our laboratory
- 2018.03.25
- Ms. Hiroko Yamada graduated from the Department of Chemistry, Faculty of Science.
- 2018.01.01
- Dr. Koji Tabata was promoted to a specially appointed assistant professor.
- 2017.10.25
- Dr. Yutaro Kabata at Kobe University visited our laboratory.
- 2017.10.01
- Mr. Udoy Sankar Basak joined our laboratory.