Publications_ENGLISH | Komatsuzaki Group, Hokkaido University

2021.05.17: Invited Paper by Udoy S. Basak, Sulimon Sattari, Md. Motaleb Hossain, Kazuki Horikawa, Tamiki Komatsuzaki, ”Transfer entropy dependent on distance among agents in quantifying leader-follower relationships” was published in Biophysics and Physicobiology

2020.12.14: Udoy S. Basak, Sulimon Sattari, Kazuki Horikawa, Tamiki Komatsuzaki “Erratum: Inferring domain of interactions among particles from ensemble of trajectories” was published

2020.07.09: Udoy S. Basak, Sulimon Sattari, Kazuki Horikawa, and Tamiki Komatsuzaki, “Inferring domain of interactions among particles from ensemble of trajectories” was published

2020.03.24: Tamiki Komatsuzaki, Haruki Nakamura, Jeremy Tame, Saeko Yanaka, Takeharu Nagai & Kuniaki Nagayama , “Editorial for the Special Issue of Biophysical Reviews focused on the Biophysical Society of Japan with select scientific content from the 57th BSJ annual meeting, Miyazaki, Japan” was published

2020.01.22: Hiroshi Teramoto, Asahi Tsuchida, Kenji Kondo, Shyuichi Izumiya, Mikito Toda, and Tamiki Komatsuzaki “Application of Singularity Theory to Bifurcation of Band Structures in Crystals” was accepted.

2019.10.30: Koji Tabata, Atsuyoshi Nakamura, Junya Honda, Tamiki Komatsuzaki, “A bad arm existence checking problem: How to utilize asymmetric problem structure?” was published

2019.09.27: The article “K. M. Helal, J. N. Taylor, H. Cahyadi, A. Okajima, K. Tabata, Y. Itoh, H. Tanaka, K. Fujita, Y. Harada, T. Komatsuzaki, Raman spectroscopic histology using machine learning for nonalcoholic fatty liver disease, FEBS Lett. 593(18) (2019) 2535-2544”, has been selected as editor’s choice . The cover art of this volume of FEBS Letters is taken from this article.

2018.11.15: Tamiki Komatsuzaki Minorities and Small Numbers from Molecules to Organisms in Biology-Toward a New Understanding of Biological Phenomena: Chapter 5 “The Personality of Small Numbers: Do Molecules Have Personality?” edited by Takeharu Nagai and Yuichi Togashi (Springer) was published.

2018.07.18: Sosuke Ito, “Stochastic thermodynamic interpretation of information geometry” was published

2018.05.01: Tamiki Komatsuzaki, “化学反応理論の普遍性：GRRMに期するもの”, IQCE NEWS was published.

2018.01.24: James Nicholas Taylor, Menahem Pirchi, Gilad Haran, Tamiki Komatsuzaki, “Deciphering hierarchical features in the energy landscape of adenylate kinase folding/unfolding”, The Journal of Chemical Physics was published.

2018.01.22: James Nicholas Taylor, Menahem Pirchi, Gilad Haran, and Tamiki Komatsuzaki: “Deciphering hierarchical features in the energy landscape of Adenylate Kinase folding/unfolding”, J. Chem. Phys. Special Issue Single Molecule Biology (invited) was selected as “Editor’s Pick”

2017.12.12: Yuji Tamiy, Rikiya Watanabe, Hiroyuki Noji, Chun-Biu Li, Tamiki Komatsuzaki, “Effects of non-equilibrium angle fluctuation on F1-ATPase kinetics induced by temperature increase”, Physical Chemistry Chemical Physics was published.

2017.11.20: Nathan Hervieux, Satoru Tsugawa, Antoine Fruleux, Mathilde Dumond, Anne-Lise Routier-Kierzkowska, Tamiki Komatsuzaki, Arezki Boudaoud, John C. Larkin, Richard S. Smith, Chun-Biu Li, Olivier Hamant, “Mechanical Shielding of Rapidly Growing Cells Buffers Growth Heterogeneity and Contributes to Organ Shape Reproducibility”, Current Biology was published.

2017.11.20: Yuichi Togashi, Soya Shinkai, Tamiki Komatsuzaki, “特集：少数性生物学ってなんだ？: 「少数と個性―分子の数と生命らしさ」”, Experimental Medicine was published.

2017.09.25: Tamiki Komatsuzaki, “Advances in Chemical Physics: “Single Molecule Data Analysis: An Introduction”” was published

2017.09.05: Sosuke Ito and Takahiro Sagawa, “ネットワーク上の情報熱力学とその生体情報処理への応用”, The Nihon Butsuri Gakkaishi was published

2017.07.24: Jonas Alfermann, Xun Sun, Florian Mayerthaler, Thomas E. Morrell, Eva Dehling, Gerrit Volkmann, Tamiki Komatsuzaki, Haw Yang, and Henning D. Mootz, “FRET monitoring of a nonribosomal peptide synthetase”, Nature Chemical Biology was published

2017.07.14: Hiroshi Teramoto, Kenji Kondo, Shyuichi Izumiya, Mikito Toda, and Tamiki Komatsuzaki, “Classification of Hamiltonians in neighborhoods of band crossings in terms of the theory of singularities”, Journal of Mathematical Physics was published

2017.03.25: Tamiki Komatsuzaki, “少数性生物学：第5章「少数の個性～分子にも個性？～」” was published

2016.10.03: Laurent Wiesenfeld, Wing-Fai Thi, Paola Caselli, Alexandre Faure, Luca Bizzocchi, João Brandão, Denis Duflot, Eric Herbst, Stephen J. Klippenstein, Tamiki Komatsuzaki, Cristina Puzzarini, Octavio oncero, Hiroshi Teramoto, Mikito Toda, Ad van der Avoird, Holger Waalkens, “Theory of Gas Phase Scattering and Reactivity for Astrochemistry”, Report from the Workshop on Theory of Gas Phase Scattering and Reactivity for Astrochemistry Nov 23 – Dec 4, 2015 was published

2016.07.25: Tamiki Komatsuzaki, “データ科学雑感”, SEIBUTSU BUTSURI was published

2016.07.11: L. Hong, M. Dumond, S. Tsugawa, A. Sapala, A.-L. Routier-Kierzkowska, Y. Zhou, C. Chen, A. Kiss, M. Zhu, O. Hamant, R. S. Smith, T. Komatsuzaki, C.-B. Li, A. Boudaoud & A. H. K. Roeder, “Variable cell growth yields reproducible organ development through spatiotemporal averaging”, Developmental Cell was published

2016.04.26: Satoru Tsugawa, Nathan Hervieux, Olivier Hamant, Arezki Boudaoud, Richard S. Smith, Chun-Biu Li, Tamiki Komatsuzaki, “Extracting subcellular fibrillar alignment with error estimation: Application to microtubules”, Biophysical Journal was published

2015.12.31: Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki, “Understandings of chemical reaction dynamics in terms of dynamical systems theory”, AIP Conference Proceedings was published

2015.12.17: C.B. Li, H. Ueno, R. Watanabe, H. Noji, T. Komatsuzaki, “ATP hydrolysis assists phosphate release and promotes reaction ordering in F1-ATPase”, Nature Communications was published

2015.12.07: Yutaka Nagahata, Satoshi Maeda, Hiroshi Teramoto, Takashi Horiyama, Tetsuya Taketsugu, Tamiki Komatsuzaki, “Deciphering Time Scale Hierarchy in Reaction Networks”, The Journal of Physical Chemistry B was published

2015.11.18: The collaborative paper of Mr. Nagahata “Kinetic Analysis for the Multistep Profiles of Organic Reactions: Significance of the Conformational Entropy on the Rate Constants of the Claisen Rearrangement” was accepted in the Journal of Physical Chemistry.

2015.11.02: Dr. Chun-Biu’s paper “ATP hydrolysis assists Phosphate release and promotes reaction ordering in F1-ATPase” was accepted in Nature Communications.

2015.08.28: Dr. Teramoto’s paper “Mechanism and Experimental Observability of Global Switching Between Reactive and Nonreactive Coordinates at High Total Energies” was published in Physical Review Letter.

2015.03.17: J. N. Taylor, C.-B. Li, D. Cooper, C. F. Landes and T. Komatsuzaki, “Error-based Extraction of States and Energy Landscapes from Experimental Single-Molecule Time-Series”, Scientific Reports was published

2015.02.28: Y. Tamiya, S. Shinkai, Y. Aizawa, “Log-Weibull Law in Fermi-Pasta-Ulam Oscillator Chain : Induction Time as Nekhoroshev Stability Time”, ASTE; Advances in Science, Technology and Environmentology, Special issue on New Challenges in Complex Systems Science was published

2015.02.28: Hiroshi Teramoto, Mikito Toda, and Tamiki Komatsuzaki, “A coarse graining method to extract cooperative modes of water molecules”, ASTE; Advances in Science, Technology and Environmentology, Special issue on New Challenges in Complex Systems Science was published

2015.02.28: Chun Biu Li, “Challenges in Constructing State-Space Network Models for Complex Systems at the Single Molecule Level”, ASTE; Advances in Science, Technology and Environmentology, Special issue on New Challenges in Complex Systems Science was published

2014.10.15: Tamiki Komatsuzaki, “Bridge the Differences between Top-down and Bottom-up”, Seitai no Kagaku was published

2014.10.06: Hideyuki Yaginuma, Shinnosuke Kawai, Kazuhito V. Tabata, Keisuke Tomiyama, Akira Kakizuka, Tamiki Komatsuzaki, Hiroyuki Noji & Hiromi Imamura, “Diversity in ATP concentrations in a single bacterial cell population revealed by quantitative single-cell imaging”, Scientific Reports was published

2014.09.25: Chun-Biu Li, Tamiki Komatsuzaki, “Handling Noisy Data from Single Molecule Experiments”, SEIBUTSU BUTSURI was published

2014.09.13: Hiroshi Teramoto, Mikito Toda, Tamiki Komatsuzaki, “A New Method to Improve Validity Range of Lie Canonical Perturbation Theory: With a Central Focus on a Concept of Non Blow-Up Region”, Theoretical Chemistry Accounts was published

2014.09.11: Preetom Nag, Hiroshi Teramoto, Chun-Biu Li, Joseph Z. Terdik, Norbert F. Scherer, Tamiki Komatsuzaki, “Local-heterogeneous responses and transient dynamics of cage breaking”, The Journal of Chemical Physics was published

2014.08.28: B. Shuang, D. Cooper, J. N. Taylor, L. Kisley, J. Chen, W. Wang, C.-B. Li, T. Komatsuzaki, C. F. Landes, “Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis”, The Journal of Physical Chemistry Letters was published

2014.06.01: Chun-Biu Li and Tamiki Komatsuzaki, “Handling Noisy Data from Single Molecule Experiments” to be appeared as TOPICS article in SEIBUTSU BUTSURI (invited).